| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0325 |
|---|
| Symbol | |
|---|
| ID | 4921970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 371031 |
|---|
| End bp | 371924 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640161853 |
|---|
| Product | tyrosine recombinase XerC |
|---|
| Protein accession | YP_001092456 |
|---|
| Protein GI | 127511259 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACG ACTGGGTGCA GGAATTTGTC TCATATCTGG TCAGTGAGCG GCAGCTCTCT
CCCCACACGG TCAGAAACTA TCGCTTCGAG CTCGAGCGGG TCGGCGAACT CCTCCCCGAG
AATTTTATCT GGGCAGAGGT CAGCGACGAA CAGCTGCAAG CCGTGCTCAA TAAGCTGCAC
CGCAAGGGGC TGGGGCCTCG CTCCATCGCC CTGACGCTGT CGGCCCTCAA GCAGTTTTGT
CATTATCTGC TGCAAGAGGG CTATATCAAA AAAGATCCCT GCCTGAACCT CAGCGCCCCC
AAACAGCAAA AGCCCCTGCC TAAGAATATG GATCTCGATT CCGTGACCCA TCTTCTGTCT
ATCGAGGGGG ACGATGCGCT GGCGTTGCGG GATAAGGCGA TCATGGAGCT GTTCTACTCT
TCTGGCTTGC GTCTGGCCGA GCTGGCGGCC CTGGATACCC GAGATATCGC CAGCGGCGAG
CATCAGGTCA AGGTCATGGG TAAGGGCAGC AAGGAGCGTA TCGTACCCAT TGGCCGCATG
GCACTGAGTG CCATCGACGA CTGGCTCAAG GTGCGCTCGC TTTTGCCCTG TGAAGACGAC
GCCCTGTTTG TCACCGCCAA GGGCAAACGC CTCGCCCACA GGAGCATACA GGCCAGGCTA
AACAAGTGGG GTCAGCTGCA GGGGCTAAAT GCCCGGGTGC ATCCCCATAA GCTGCGCCAC
TCCTTTGCAA CCCATATGCT GGAATCTAGC GCGGATCTCA GGGCGGTGCA GGAACTGCTG
GGGCATGCCA ACCTGTCGAC GACTCAGGTC TACACCAGCC TGGACTTCCA ACACCTAGCC
AAGGTCTACG ACGGCGCCCA TCCCAGGGCG AAGAAGCGGG GTGGTAATGG TTAG
|
|---|
| Protein sequence | MSDDWVQEFV SYLVSERQLS PHTVRNYRFE LERVGELLPE NFIWAEVSDE QLQAVLNKLH
RKGLGPRSIA LTLSALKQFC HYLLQEGYIK KDPCLNLSAP KQQKPLPKNM DLDSVTHLLS
IEGDDALALR DKAIMELFYS SGLRLAELAA LDTRDIASGE HQVKVMGKGS KERIVPIGRM
ALSAIDDWLK VRSLLPCEDD ALFVTAKGKR LAHRSIQARL NKWGQLQGLN ARVHPHKLRH
SFATHMLESS ADLRAVQELL GHANLSTTQV YTSLDFQHLA KVYDGAHPRA KKRGGNG
|
|---|
| |