| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0323 |
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| Symbol | dapF |
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| ID | 4920558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 369549 |
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| End bp | 370388 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640161851 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001092454 |
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| Protein GI | 127511257 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCCATT TCACCAAGAT GCACGGTTTA GGCAATGACT TTATGGTGGT CGATGGCGTG
ACGCAGAACG TCTATTTCTC GCCCGAGCAG ATAAAGCGCT TAGCGGATCG CAACTTCGGC
ATCGGTTTCG ATCAGCTCCT GTTGGTGGAG CCGCCCTATG ATCCTGATTT GGATTTTCAC
TATCGCATCT TTAATGCCGA TGGCAGCGAA GTCGAGCAGT GTGGCAATGG CGCTCGCTGT
TTCGCGCGCT TCGTTAAGAG CAAGGGCTTG ATCAATAAGC AGAAGATCAA GGTCAGTACC
TCTTCTGGCA AGATGACCTT GCGCCTTGAA CGTGACGGCA GCGTCACGGT CAACATGGGA
ATCCCTGTGC TGGAGCCGAG TCGCATCCCA TTCAATGCCA AGAAGGCGGA GAAGACCTAC
CTACTGCAGG CCGATATGCC TGAGGGCATG CAGACCTTCC TCTGCGGCGC CGTGTCTATG
GGTAATCCTC ACTGTGTGCT GGAGGTCGAC GATGTGGCCA ACGCTGATGT CGAGCGGATA
GGTTCACTGC TCACCAAGCA TGAACGTTTC CCCAAGGGGG TGAACGTAGG TTTCATGCAG
GTGGTCGATG CAAACCATAT TAAACTTAGA GTGTATGAAC GCGGCGCGGC CGAAACCTTG
GCCTGTGGCA GCGGCGCCTG TGCGGCCGTG GCCGTGGGCC AACTGCAAGG CAAGCTCGCC
AGACGCGTGC GAGTCGACCT TCCCGGTGGT AGCTTAACCA TCAACTGGGA AGGCGAGGGT
AAGCCCCTAT GGATGACGGG GCCTGCTGAA CATGTATACG ATGGACAGAT ACAGCAATGA
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| Protein sequence | MIHFTKMHGL GNDFMVVDGV TQNVYFSPEQ IKRLADRNFG IGFDQLLLVE PPYDPDLDFH
YRIFNADGSE VEQCGNGARC FARFVKSKGL INKQKIKVST SSGKMTLRLE RDGSVTVNMG
IPVLEPSRIP FNAKKAEKTY LLQADMPEGM QTFLCGAVSM GNPHCVLEVD DVANADVERI
GSLLTKHERF PKGVNVGFMQ VVDANHIKLR VYERGAAETL ACGSGACAAV AVGQLQGKLA
RRVRVDLPGG SLTINWEGEG KPLWMTGPAE HVYDGQIQQ
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