| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0322 |
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| Symbol | |
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| ID | 4924067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 368267 |
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| End bp | 369511 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161850 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001092453 |
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| Protein GI | 127511256 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.475449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATCACT TTCTCTATCA ACAAGATGAA CTCTATGCCG AGCAATGTAC CGTTGCCTCT
CTCGCAGAAA CCTATGGCAC GCCGCTCTAT GTCTATTCGC GCGCGACCCT AGAGCGCCAC
TGGCATGCCT TCGACAATGC GGTTGCCGAC CATCCCCATA TGATCTGCTA CGCGGTGAAG
GCCAACTCTA ACCTGGCGGT GCTGAATGTG TTAGCGCGTC TGGGCAGTGG CTTCGATATC
GTCTCCGGCG GCGAGTTGGC AAGAGTATTA GAAGCCGGTG GTGAGGCGAG TAAGGTGGTC
TTCTCTGGCG TCGGCAAGAC AGTTGCCGAG ATGGAGATGG CCCTGGAAGC GGGGATCTAC
TGCTTCAATG TCGAGTCGGC CGCCGAGCTC GAGCAGCTTA ACCTGGTCGC ACTGAGGCTG
GGCAAAGTCG CGCCTGTATC ACTGCGGGTT AACCCAGATG TGGACGCCGG CACACACCCT
TATATCTCGA CCGGCTTGAA AGAGAATAAG TTTGGTATCG CCATGGAAGA GGCCGAGGCG
ATCTTCCTGC GGGCAAATGA ATTGCCGGGC CTGGCAGTGA AGGGCGCCGA TTGCCATATC
GGCTCGCAGC TCACCGAGTT ACAGCCTTTC CTCGATGCCA TGGATCGCAT GTTGGCCCTC
ATCGACCGTC TGGCCGAGCA GGGGGTGAAG ATTGCGCACC TGGATGTGGG CGGCGGTCTG
GGGGTCACCT ATGATGGCGA GCAGCCGCCG GAGCCGAGTG CCTACGCCAG TGCCCTGCTT
GGTAAACTCG CGGGACGCGA CCTCAAGCTC ATCTTCGAGC CGGGACGTGC CATTGCCGCC
AATGCCGGTA TCTTCGTGAC TCAGGTGCTC TACCTGAAAG AGAACGCCGA GAAGAATTTC
GCCCTAGTCG ACGGCGCCAT GAACGACCTT ATTCGTCCTT CGCTGTATAG TGCCTGGCAG
AAGATCATCC CTGTGGTTCC ACGCCCAGGC GAGACCCGCC AATATGACGT GGTGGGCCCA
GTGTGTGAGA CGGGTGACTT CTTAGGCAAA GACAGGGCGC TCAACATCAG GGCCAATGAT
CTGTTGGCGG TGCGCTCGTC GGGCGCCTAT GGCTTTACCA TGGCATCAAA TTATAACTCT
CGCCCCCGCG CCGCCGAGGT GATGGTGGAT GGCGAACGTC ATTATTTGGT GAGAGAGCGA
GAAAAAGTCG CGCAATTATG GCAAGGTGAA CAACTCCTCC CTTAA
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| Protein sequence | MDHFLYQQDE LYAEQCTVAS LAETYGTPLY VYSRATLERH WHAFDNAVAD HPHMICYAVK
ANSNLAVLNV LARLGSGFDI VSGGELARVL EAGGEASKVV FSGVGKTVAE MEMALEAGIY
CFNVESAAEL EQLNLVALRL GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIAMEEAEA
IFLRANELPG LAVKGADCHI GSQLTELQPF LDAMDRMLAL IDRLAEQGVK IAHLDVGGGL
GVTYDGEQPP EPSAYASALL GKLAGRDLKL IFEPGRAIAA NAGIFVTQVL YLKENAEKNF
ALVDGAMNDL IRPSLYSAWQ KIIPVVPRPG ETRQYDVVGP VCETGDFLGK DRALNIRAND
LLAVRSSGAY GFTMASNYNS RPRAAEVMVD GERHYLVRER EKVAQLWQGE QLLP
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