Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0317 |
Symbol | |
ID | 4924048 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 362929 |
End bp | 363660 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640161845 |
Product | uroporphyrinogen III synthase HEM4 |
Protein accession | YP_001092448 |
Protein GI | 127511251 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1587] Uroporphyrinogen-III synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTAC TCCTGACGCG CCCCGAAGGG CGCAATCAGT CTATGGCCGA GGCACTGTCA CAACGTGACG TGCCATTCAC CATAGCGCCG CTGCTAGCGG TCGTCGCAAA TAACGAAGCC GACCATGAGC ACAAGAAAAA GCTTTTCTAT CAGTCTGATA TCATCATCTT TATCAGCACC AATGCGGTAG AGTATGCCGA TATTGCCCTG TCGTCAGCTT GGCCTAAGGA TAAGCAATAT TTTGCGGTCG GTCAGGCAAC CTATTGCGCC CTTAAGGACA AAGGCATTGT GGCCTTTGAG GCCCCCGAGT CTTGCCAGCA AACCGAAGGC CTGCTTACCT TAGCTCAGCT GCAAGCCATT ACTGGACAAC AGATCACCAT AGTCAGGGGA GTCGGCGGCC GGGAAACTCT GGCCAGCGAA CTGGCAGATA GAGGCGCCAA GGTCGACTAC TGGGAGGTCT ATCGCCGCGC CTGCCCACAG CTCGATCCCC ACACTCCCTA TGAATGGCGA GAGCAAGCAA TTGACACCAT AGTGATTACC AGTGGTGAAA TTCTGGCCAA CCTAATTACA CTTGTACCTA AAGAATTATT TGCTTGGCTG CACGCATGTC ATATTATAGT GCCCAGCGCA CGTGTCTATG ACCAAGCCAT TGCGGCAGGT TTTACACGGG TCACCAATGC AAAAGCAGCA AACCGCGACG CAGTACTCAC AGCCTTAGGT TTACAGGATT AA
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Protein sequence | MKLLLTRPEG RNQSMAEALS QRDVPFTIAP LLAVVANNEA DHEHKKKLFY QSDIIIFIST NAVEYADIAL SSAWPKDKQY FAVGQATYCA LKDKGIVAFE APESCQQTEG LLTLAQLQAI TGQQITIVRG VGGRETLASE LADRGAKVDY WEVYRRACPQ LDPHTPYEWR EQAIDTIVIT SGEILANLIT LVPKELFAWL HACHIIVPSA RVYDQAIAAG FTRVTNAKAA NRDAVLTALG LQD
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