| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0314 |
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| Symbol | |
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| ID | 4923970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 355622 |
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| End bp | 360283 |
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| Gene Length | 4662 bp |
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| Protein Length | 1553 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640161842 |
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| Product | putative outer membrane adhesin like proteiin |
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| Protein accession | YP_001092445 |
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| Protein GI | 127511248 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat
[TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0526571 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATGG GTGCTTCAAT CACAACACAG GATGCAGTAG TTGTTAACCT TGTAGGCGAA
CTCAAGGTTA AAGATGAACA AGGAAATATC AGAGAGGTAA AAATAGGCGA CCTGATCCAT
GCCGGGGAGC AACTTATATT TTCACCCAAT GCTAAGTTTA ATCTTGAATA TGAAGATGGC
TCATCAACGA CCCAAGCCAA CTTGATGCAA GACACGCTTA ATCAAGATAC AACGGTGAGC
CAGGACACCG GTCAGGAACA ACAGAGCGAC GCCGCGCCGC AAACCAACAC GCCGGTAGCC
TTAGATCCCG AAATCGCCGC GCTGCAGGCG CAGATATTGG CCGGTGAAGA TCCGACCCAA
GGACTGCCCG AAACCGCCGC CGGAGCCGGC ACACCGACTA ACCAGGGCGA CGCTTACTTC
GTCTCAGTCG GCAGAACCGG TGATGAAACC CTCGCCGATG CCGGCTGGGA CACAGCAGGT
TTCCCACTGA CGCCAGATAC CACAGTTGAA GAGGTGATCA TTCCCGAGCT TCAACCCAGT
GCGCCCACTG TCTCCTCTGC GACCTTCTCG CTATTTGAGG CCAACCTGGC CCAGGGTAGT
TCACCTTCTG CACTACTCAC CAATTTTGCC AACAACATTC AAACAGCTGC AGATGCAGGT
ATTAGCAGCC TGACTATCAA TGGCATCAAT ATCATTAGTG GCGGCCAATT TGCTGGCCCC
ATAGTAATCA ACACGCCCAA TGGTGTCCTC ACCATCACCG GCTTTGACAG CGCGTCGGGA
CAATTTACCT ACGACTACGC TTTCAATAGC TCAGCCGATC ACAGCGCTGG CGATCAGCTG
CAGTTCCTGT TCAATATAGA ATTGGTCGAT AATCAAGGCG ATATCGCCAC AGGTACCATT
ACCGTCAATA TTATCGACGA TCAGCCAGAA GGGTTCGCCG ACAGCAACGC CGTCACCGAA
GATACGGCTA CAGTGGCAAC AGGCAACGTA CTCGGCAACG ACATACAAGG TGCAGACTCA
GCAGAGGTTA CCGCTGTCAC TAACAGCCAA GGCACCTCAA TTAGCCTTGG TGAAACCAAT
AGCATCCAAG GTCAGTTCGG GGTACTCACC CTGTTTGCCG ATGGTAGCTA TAGCTATCAA
CTCAACAATG GATCCAGCGC AGTACAATCA CTCGCACTAG GCCAGCAGAT AACCGAAACC
TTTAACTACC TGCTAACCGA TAGCGATGGC GACTCGGTAC TCGTCCCGCT AACCATCACC
ATCACGGGTA CTAATGACAC TCCCATCATC ACCTCGAACA TTGAAGCCGC CACCGGTAGC
GTACTGGAAG CCGGCGTCAT GGATGGTGGT AACGTGCCTG AGCCAGGCAG CCTAGTCACC
GGCGGCACCT TAACCGCAGC AGATGTGGAC AACGGCGCCA GCTGGACCTG GAGCGGTGTG
CCTCAGGTCA GCGACTACGG TACCTTTAGC ATCAACGCCA GCACCGGTGA GTGGAGTTAC
ACCCTGGCCG ATAACGCCCT GGTCGATGCC CTCGCCCAAG GCGAGACCCA TGAGGAGACC
TTCCTGGTCA CCGTCACCGA CGAGCACGGT GCCTACAGCA CCCAGCTGGT CACGGTCACC
GTTACCGGTA CCAACGATAT TCCGGTCATC ACCTCGAACA TTGAAGCCGC CACCGGTAGC
GTACTGGAAG CCGGCGTCAT GGATGGTGGT AACGTGCCTG AGCCAGGCAG CCTAGTCACC
GGCGGCACCT TAACCGCAGC AGATGTGGAC AACGGCGCCA GCTGGACCTG GAGCGGTGTG
CCTCAGGTCA GCGACTACGG TACCTTTAGC ATCAACGCCA GCACCGGTGA GTGGAGTTAC
ACCCTGGCCG ATAACGCCCT GGTCGATGCC CTCGCCCAAG GCGAGACCCA TGAGGAGACC
TTCCTGGTCA CCGTCACCGA CGAGCACGGT GCCTACAGCA CCCAGCTGGT CACGGTCACC
GTTACCGGTA CCAACGATAT TCCGGTCATC ACCTCGAACA TTGAAGCCGC CACCGGTAGC
GTACTGGAAG CCGGCGTCAT GGATGGTGGT AACGTGCCTG AGCCAGGCAG CCTAGTCACC
GGCGGCACCT TAACCGCAGC AGATGTGGAC AACGGCGCCA GCTGGACCTG GAGCGGTGTG
CCTCAGGTCA GCGACTACGG TACCTTTAGC ATCAACGCCA GCACCGGTGA GTGGAGTTAC
ACCCTGGCCG ATAACGCCCT GGTCGATTCC CTCGCCCAAG GCGAGACCCA TGAGGAGACC
TTCCTGGTCA CCGTCACCGA CGAGCACGGT GCCTACAGCA CCCAGCTGGT CACGGTCACC
GTTACCGGTA CCAACGATAT TCCGGTCATC ACCTCGAACA TTGAAGCCGC CACCGGTAGC
GTACTGGAAG CCGGCGTCAT GGATGGTGGT AACGTGCCTG AGCCAGGCAG CCTAGTCACC
GGCGGCACCT TAACCGCAGC AGATGTCGAC AACGGCGCCA GCTGGACCTG GAGCGGTGTG
CCTCAGGTCA GCGACTACGG TACCTTTAGC ATCAACGCCA GCACCGGTGA GTGGAGTTAC
ACCCTGGCCG ATAACGCCCT GGTCGATGCC CTCGCCCAAG GCGAGACCCA TGAGGAGACC
TTCCTGGTCA CCGTCACCGA CGAGCACGGT GCCTACAGCA CCCAGCTGGT CACGGTCACC
GTTACCGGTA CCAACGATAT TCCGGTGCTT ACGATTGATA AGACAAGTGG CTTGGTCACC
GAAGATGACT CAGACCCAAT GTTGACCGAT ACAGGAACGT TAAGTTTTAC AGATGTAGAC
GATGAGTATT TACCAGAATA TGTAGGCCAT GATCTGTCTG CTAGTTATGT CGCTAACAGC
TTAATGTGGA GTGGAGGCGA TATAACAGAC GTCCTGAGCG CCGATCAAAT TCAAGCGCTC
ATCGACGGAT TTAGCGTTTA TCAAGATCAT TGGGATTACT CAATTCTCAA CTCACTTGTA
CAGTTCCTAG CGGCCAATGA AACCATTACT CTTAGCTTCG ATGTCACTGT GGCGGACAAG
CATGGGGCTT ACGATACCCA AACGGTCACA ATCACCATTA ATGGTAATAA TGATCCGATT
GAGGGTGAGT TTGCTAAAGA GATCTGGGTA CCCGCCTCAC TTGCAGAAAT AGCCATACCT
TATCTAGATG GTTATCCGCT TGGTATCGAT GTGCCAACGG ATCAGGACTA TAACGATGTC
ATTACCATTA CTGGATTAAG TTTATCCTTC GTTGATCCCG ACGAAACAGC CGACATAGGT
GAGATCTGGT ACGTCGATGA CAATACGGGC GTATTAACCC TGTATGACTT CGATAATCCA
GTCGTGCTTT CTGCTTCAGA GCTAGGTAGC CTGGTGTATG TCCCAGGAGA TAATGCAGGT
ATTGAAGATC AACTGGATAT CAACCTAACC TTCACGGTCA ACTCAGGTTC CGATAGCGTC
GATGGCAACT TTGTCATACA TACAGTTCCA GCAAATAGCC TGGGCGGAAA TACCGTACTA
ATCGGTGATG GCTCATCACC ATTGACGTCA GGTAATGACC AAGACGCTTA TCTGACTGTC
AGCAGTGCAT TTGCCAGCGC CATAAACTTA GATCCAAGCA GCGGTGCATT AGATCTATTT
ACCGATTTCC AAAAATCACC TTTCGACATC CCAATTCCTA ACGGCGAGAT TGGTGGACAG
ACTGGCATTG AAAGGGAGGA AGAAGTATCT GTAAGGCTGA CCATTAACGG TATCACCTTT
ATTGTGATAG CAGCAGCGAA TGGCGTAACA GATTGGTTTT ATGACGCTAA CTCCGGTTTG
ATGAGTGCTC ATATCTCTTA TACAAACATT CTAATGGAAT CTGACAATAG CATCACCCTG
GCCGATTATC TCGGTGCCAA TCCTGTCGAT CCAGGTGATA TTTGGACCAT TACTTACTTG
GATAATGATG GTGGTTCTTA TCAGGCACGC TTTGTTCAGG CAACCTTTAC CCATGAATTG
CTCCCTGATA CCGCAGTAAC GGTCACAGGA ACTGATAATG TAGATAATCT CATTTTCGGT
ACTACAGAAG GAGACTCATT AACTGGGGCA AACCTTGATG ACGAAATTTA TGGTCGAGAA
GGTAACGACT CCATATTCGG ATTGGAAGGC GACGATCAAC TCATCGGTGG CTCTGGTGAC
GATCTGATCG AAGGCGGAAG TGGTAATGAC ATCATCTTAG GAGGCCTAGG AAACGACACT
ATCGATGGCG GCATAGGCGC CGATATACTC ATTGGTGGTG CGGGCAGCGA CACCATAGAT
GCAGGTATAG ATAGCGATAT AGATACCTTT GTTTGGGATG TTGGGTCCGA TGACAACAGC
ATAGATACTG TGCTCAACTT CGATATCAGT ATGGATAAGC TAGATTTGTC TGCCATATTG
GTTGATGAAG AGAGTGGTGT ATATGCTTTA GATCAATACT TAGCGTTCAA TTTCAGTGGT
GGTAACACTG AGATCTCTGT TGATGCCAAC CATGATGGAG TGGTGGATCT CACTATAGTA
TTGAACAATG TTGACTTAAC CAATAACAAC ACCTTAAGTG ATGCTCAGAT CATCAACAAC
CTACTCGGTA ACGAAAACTT GGTAATTGAT ACAATTCCAT AA
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| Protein sequence | MIMGASITTQ DAVVVNLVGE LKVKDEQGNI REVKIGDLIH AGEQLIFSPN AKFNLEYEDG
SSTTQANLMQ DTLNQDTTVS QDTGQEQQSD AAPQTNTPVA LDPEIAALQA QILAGEDPTQ
GLPETAAGAG TPTNQGDAYF VSVGRTGDET LADAGWDTAG FPLTPDTTVE EVIIPELQPS
APTVSSATFS LFEANLAQGS SPSALLTNFA NNIQTAADAG ISSLTINGIN IISGGQFAGP
IVINTPNGVL TITGFDSASG QFTYDYAFNS SADHSAGDQL QFLFNIELVD NQGDIATGTI
TVNIIDDQPE GFADSNAVTE DTATVATGNV LGNDIQGADS AEVTAVTNSQ GTSISLGETN
SIQGQFGVLT LFADGSYSYQ LNNGSSAVQS LALGQQITET FNYLLTDSDG DSVLVPLTIT
ITGTNDTPII TSNIEAATGS VLEAGVMDGG NVPEPGSLVT GGTLTAADVD NGASWTWSGV
PQVSDYGTFS INASTGEWSY TLADNALVDA LAQGETHEET FLVTVTDEHG AYSTQLVTVT
VTGTNDIPVI TSNIEAATGS VLEAGVMDGG NVPEPGSLVT GGTLTAADVD NGASWTWSGV
PQVSDYGTFS INASTGEWSY TLADNALVDA LAQGETHEET FLVTVTDEHG AYSTQLVTVT
VTGTNDIPVI TSNIEAATGS VLEAGVMDGG NVPEPGSLVT GGTLTAADVD NGASWTWSGV
PQVSDYGTFS INASTGEWSY TLADNALVDS LAQGETHEET FLVTVTDEHG AYSTQLVTVT
VTGTNDIPVI TSNIEAATGS VLEAGVMDGG NVPEPGSLVT GGTLTAADVD NGASWTWSGV
PQVSDYGTFS INASTGEWSY TLADNALVDA LAQGETHEET FLVTVTDEHG AYSTQLVTVT
VTGTNDIPVL TIDKTSGLVT EDDSDPMLTD TGTLSFTDVD DEYLPEYVGH DLSASYVANS
LMWSGGDITD VLSADQIQAL IDGFSVYQDH WDYSILNSLV QFLAANETIT LSFDVTVADK
HGAYDTQTVT ITINGNNDPI EGEFAKEIWV PASLAEIAIP YLDGYPLGID VPTDQDYNDV
ITITGLSLSF VDPDETADIG EIWYVDDNTG VLTLYDFDNP VVLSASELGS LVYVPGDNAG
IEDQLDINLT FTVNSGSDSV DGNFVIHTVP ANSLGGNTVL IGDGSSPLTS GNDQDAYLTV
SSAFASAINL DPSSGALDLF TDFQKSPFDI PIPNGEIGGQ TGIEREEEVS VRLTINGITF
IVIAAANGVT DWFYDANSGL MSAHISYTNI LMESDNSITL ADYLGANPVD PGDIWTITYL
DNDGGSYQAR FVQATFTHEL LPDTAVTVTG TDNVDNLIFG TTEGDSLTGA NLDDEIYGRE
GNDSIFGLEG DDQLIGGSGD DLIEGGSGND IILGGLGNDT IDGGIGADIL IGGAGSDTID
AGIDSDIDTF VWDVGSDDNS IDTVLNFDIS MDKLDLSAIL VDEESGVYAL DQYLAFNFSG
GNTEISVDAN HDGVVDLTIV LNNVDLTNNN TLSDAQIINN LLGNENLVID TIP
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