| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0310 |
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| Symbol | |
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| ID | 4924280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 335861 |
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| End bp | 337273 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640161838 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001092441 |
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| Protein GI | 127511244 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.952787 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAGC AAACCATGCA TCAACTAAAG CGCAGTGCCA TGGCACTCGC CATTAGTGCG
ATGTTGATAC CGGGGGCAGC CTCTAGCCAA ACGCTAGAAC AGGCTGTGGC CCATACGCTG
GATACCAATC CAGATATTCG CATCGCATTT AATCGCTTCA AGGCGCGTGA AGAGCAGGTC
AATCAGGCAA TCGCCGGTTA CATGCCTACT GTTGATATCA GTGGTGGCTA TGGCTGGGAA
CAGACAAACA GTCCATCTAC CCGACGCCGT GCAGGCCAGG GCGATGTTGA CAAGGATGGC
GTCATCGAAT TGATGCGTGG TGAAGTCGGT TTTAGCATCA AACAAATGCT ATTCGACGGT
TTCTACACCT CGAGCGAAGT GGATCGCTTC AGCTTCGAAG CCAGCGCCGA CCAATGGGCT
CTGTTTGCCG CGGCCGAAGA TATCGCGCTA GATGTAGCCA AGGTCTATGT TAACTATATC
CGCAGTGAGC AGGTGCTGAC TTTGGCAGAG AAAAACCTGC AGAGTCACAA AGACATCTAC
GATCAGATTA AGCAGCGTAC CGATTCAGGC CTGGGCTCAG TCGCCGACCT GTCTCAGATC
ACAGGTCGTC TGGCACGTGC CAACGCCAAC GTGATCGCGG CAAAGAATAA CTTCTTCGAT
GCCAAGGCGC AGTTTATCCG TATCGTCGAG AAAGAGCCGG AAAACCTGAT CGTCCCGGTC
CCCGATGACG ATATGCTGCC GACCAACCTC ACCGACGGTC TCAAGGTTGC CCAGGAAAAC
CATCCTATTC TGAAATCGGC CGCGAGTGAT ATCTCGGCGG CAGAGAACGA GCGTTCATCT
GCCCAGTCCA ACTACTATCC TAAGCTGTCG CTAGAGCTGG GTGGTAACTG GAACGATAAC
CTGGATGGCG AAGATGGCTA CTCAGCCTTC GCCTCACAAA ATGTCGGTGG TCATAACAAT
GACCTTATCG CTATGGTACG AGTGAAGTAC AACCTATTCG CCGGTGGTAA AGACTTAGCC
CGCGAGAAGG AAGCGGCCTA CAAGATTGGC GAGGCGAAAG AGATTCGTCA ACGTGCTTAC
CGTCAGGTCG TCGAAGGGGT CAACCTGGCT TGGAACGCCT ACGAGATGCT AGAGCCGCAG
AAGCTGTATA TCCGCGATCA CGTCATCGCC GCCAAGGATA CGCAAGTCGC CTATAGCCAA
CAGTTCAACC TGGGCCAGCG CACCCTATTG GATTTGCTGG ATACCGAAAA CGAACTGTTT
GAAGCGCGTA AGGATTACCT CGATGCCGAA TACGACGAGA TCATCTCCGA ATATCGCATC
CTTAACGCTA CGGGTAGACT ACTGGAATCG CTTCGTGTGA CTCGCCCAGA GGTTTGGAAG
GGTGAGCGCG AATATGAAGG GGGAGTAAAA TAA
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| Protein sequence | MSKQTMHQLK RSAMALAISA MLIPGAASSQ TLEQAVAHTL DTNPDIRIAF NRFKAREEQV
NQAIAGYMPT VDISGGYGWE QTNSPSTRRR AGQGDVDKDG VIELMRGEVG FSIKQMLFDG
FYTSSEVDRF SFEASADQWA LFAAAEDIAL DVAKVYVNYI RSEQVLTLAE KNLQSHKDIY
DQIKQRTDSG LGSVADLSQI TGRLARANAN VIAAKNNFFD AKAQFIRIVE KEPENLIVPV
PDDDMLPTNL TDGLKVAQEN HPILKSAASD ISAAENERSS AQSNYYPKLS LELGGNWNDN
LDGEDGYSAF ASQNVGGHNN DLIAMVRVKY NLFAGGKDLA REKEAAYKIG EAKEIRQRAY
RQVVEGVNLA WNAYEMLEPQ KLYIRDHVIA AKDTQVAYSQ QFNLGQRTLL DLLDTENELF
EARKDYLDAE YDEIISEYRI LNATGRLLES LRVTRPEVWK GEREYEGGVK
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