| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0308 |
|---|
| Symbol | |
|---|
| ID | 4924252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 334532 |
|---|
| End bp | 335239 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640161836 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001092439 |
|---|
| Protein GI | 127511242 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3672] Predicted periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0293189 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCA AAATTGGCAG GCAAAAACGC TTTCAAAGGG TCTGCCAACT TTGCGTTGTG
GCAACGGCCC TGGGGTTTTC TTGCCTATAC GCTTCTCCGA CGCAAACACT CGACGCCAAC
TACATTAAGT CCACCCTAGA AGCCCGATAC GGTGAGCGCG CAGGTATGCG CGTCGCCGCC
TGGTTTAAGG TACTGGATGA ATCGCAGGGC CTGAGTGAAC AAGAGAAGAT CACCAAGGTA
AATAACTTTT TCAATCTGTT TAGGTTTGTC GACGACATCA AGTTGTGGGG CGTCAGTAAC
TACTGGGCCA CGCCGATGGA GTTTATCGGG GTAAATGGTG GCGATTGTGA AGATTTCTCC
ATCGCCAAAT ATTTCACCCT GCTGCAGCTG GGGGTGCCCG ATGACAAGCT GCGGATCACT
ATGGTTAAGG CCACCTCGGT CAATCAGTAC CATATGGTGT TGGCCTACTA TGACACGCCC
GGCTCCATCC CCTTGGTATT GGATAACCTG GACAGACAGA TTAAACCAGC CACCCAGAGA
CAAGATCTGA TCCCCGTATA CAGCTTTAAC GGTCGTCAGT TGTGGCTAAA CAAAGAGAAA
GGTCGCGGTG TGCTGGCAGG CTCATCGGAA CGCCTTGAAA AATGGAATGA TCTCAAAAAT
AGATTAGGTG TTGAGCGACT CAAAATGCCT AAGTTAAGAT TGGAGTAG
|
|---|
| Protein sequence | MKAKIGRQKR FQRVCQLCVV ATALGFSCLY ASPTQTLDAN YIKSTLEARY GERAGMRVAA
WFKVLDESQG LSEQEKITKV NNFFNLFRFV DDIKLWGVSN YWATPMEFIG VNGGDCEDFS
IAKYFTLLQL GVPDDKLRIT MVKATSVNQY HMVLAYYDTP GSIPLVLDNL DRQIKPATQR
QDLIPVYSFN GRQLWLNKEK GRGVLAGSSE RLEKWNDLKN RLGVERLKMP KLRLE
|
|---|
| |