| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0305 |
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| Symbol | |
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| ID | 4923831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 327074 |
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| End bp | 329086 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161829 |
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| Product | ATP-dependent DNA helicase Rep |
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| Protein accession | YP_001092436 |
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| Protein GI | 127511239 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01074] ATP-dependent DNA helicase Rep |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCA ATCCCGGTCA AAATGATGCT GTTCACTATG TCTCTGGTCC CTGTCTGGTG
CTTGCCGGCG CGGGCAGTGG TAAGACGCGT GTGATCATCA ATAAAATTGC CTATCTGGTA
CAGAAGTGTG GTTATCAGGC GCGCAACATC GCCGCCGTGA CCTTTACCAA TAAGGCGGCG
CGGGAGATGA AGGAGCGTGT GGCCCAGTCG ATGGGACGCA AGGAGGCCAG AGGGCTGTGG
ATCTCGACCT TCCACACCCT GGGGCTTGAG ATCATCAAGC GCGAATATAA GGTGGTCGGC
CTTAAGCCCG GCTTCTCCCT GTTTGACGAC CAAGATACCC TGGCGCTGCT GAAAGAGCTG
ACCGAGAAGG AGTTTGACGG CGATAAAGAT CTGCTGCGCA TGCTGATGAC GGCCATCTCC
AACTGGAAGG GCGACCTGAT GACGCCAGAC GGCGCCATCA AAACCGCCAG AGACGAGCAG
TCACAGTTAT TTGCCTTGCT CTACCAGCGC TATGCTCAGC ATATGAAGGC TTATAATGCG
CTGGATTTCG ACGATCTTAT CCTGCTGCCC ACCCTGCTGC TGCGGCACAA GCAGGAGGTT
CGTGAACGTT GGCAGAAACG CATTCAATAC CTGCTGGTGG ATGAGTATCA GGATACCAAC
ACCAGTCAGT ATGAGCTGGT GAAATTGCTG GTTGGTGAGC GTGCCCGCTT TACCGTGGTA
GGGGACGACG ATCAGTCTAT CTACTCCTGG CGTGGGGCCA AGCCGCAAAA CCTGGTGCTT
TTGGGGAAGG ACTTTCCCAA TCTTAAGTTG ATTAAACTCG AACAAAACTA CCGCTCCAGT
CAGCGGATCC TGCGGGCAGC CAACATATTG ATCGCCAATA ACCCCCACGT CTACGACAAG
TCACTGTTCA GCGAGCTGGC CTATGGTGAG CCGCTGCGGG TGCTGATCGC CGCCAACGAG
GAGCAGGAGG CCGAGCGTGT GGTGGCCGAG ATGATCCGCC ACAAGTTTGT GGGCAAGACC
CAGTTTGGCG ACTATGCCAT CCTCTATCGG GGCAACCATC AGTCGCGCCT GCTGGAGCGC
GCCCTGATGA CCAACCGCAT CCCCTATAAG CTCAGCGGTG GCACCTCTTT CTTCGGCCGC
GCCGAGATCA AAGATATCAT GGCCTACCTG CGTCTGGTGG TGAATCCCGA CGACGATAAC
GCCTTCCTGC GAGTGGTTAA CTTGCCCAAA CGCGGCATCG GCCCTGCGAC CCTGGAACGC
TTGGGTAACT ATGCCAATGA GCAGCATATC TCCATGTTCG AGGCGATATT CCATAGCGAG
CTGAACCACC ATCTGCCGCC GGCGGCCATG TCGGCCCTGT ATCAGTTTGG CAAGTTTATC
GTCGATACCG GCGAGGCGGC GACCCGTGGC GAACCGGTTG AGGCGGTGAA GCAGCTGATC
CGCCACATCA ACTACGAAGA CTATCTGTAC GAGACCAGTA CCAGTGCCAA GGCCGCCGAG
ATGCGGATGA AGAACATCTC CGAGCTCTAC CGCTGGGTGA CCGAGATGTT AGAGGGCGAT
GAGCTGGACG AAGGGATGAC GCTGCCGGAA GTGGTGACCC GTCTGACCCT GAGAGACATG
ATGGAGCGCA ACAGCGAAGA CGAGGCCGGC GATCAGGTGC AGCTGATGAC ACTGCACGCC
TCTAAGGGCC TGGAGTTCCC CTATGTCTTC ATGGTGGGAG TGGAGGAGCG CATCTTGCCG
CACCAGACCA GCATAGATGA AGACAACGTC GAGGAGGAGC GCCGCCTGGC CTATGTGGGG
ATCACCCGGG CGCAGAGGGA GCTGTGGTTC ATGATCTGCC GCGAGCGGCG CCAGTTTGGT
GAGGTGATGC GTTGTGAGCC CAGCCGCTTC CTGATGGAGC TGCCCCAGGA CGATCTGATC
TGGGAAAACC GTAAGCCGCC TCAGTCCGAG CAGCAAAGAG TGCAGTCGGG CCGGGCCAAC
ATCGCCAACA TTCGGGATAT GCTGAAAAAG TAA
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| Protein sequence | MKLNPGQNDA VHYVSGPCLV LAGAGSGKTR VIINKIAYLV QKCGYQARNI AAVTFTNKAA
REMKERVAQS MGRKEARGLW ISTFHTLGLE IIKREYKVVG LKPGFSLFDD QDTLALLKEL
TEKEFDGDKD LLRMLMTAIS NWKGDLMTPD GAIKTARDEQ SQLFALLYQR YAQHMKAYNA
LDFDDLILLP TLLLRHKQEV RERWQKRIQY LLVDEYQDTN TSQYELVKLL VGERARFTVV
GDDDQSIYSW RGAKPQNLVL LGKDFPNLKL IKLEQNYRSS QRILRAANIL IANNPHVYDK
SLFSELAYGE PLRVLIAANE EQEAERVVAE MIRHKFVGKT QFGDYAILYR GNHQSRLLER
ALMTNRIPYK LSGGTSFFGR AEIKDIMAYL RLVVNPDDDN AFLRVVNLPK RGIGPATLER
LGNYANEQHI SMFEAIFHSE LNHHLPPAAM SALYQFGKFI VDTGEAATRG EPVEAVKQLI
RHINYEDYLY ETSTSAKAAE MRMKNISELY RWVTEMLEGD ELDEGMTLPE VVTRLTLRDM
MERNSEDEAG DQVQLMTLHA SKGLEFPYVF MVGVEERILP HQTSIDEDNV EEERRLAYVG
ITRAQRELWF MICRERRQFG EVMRCEPSRF LMELPQDDLI WENRKPPQSE QQRVQSGRAN
IANIRDMLKK
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