Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0299 |
Symbol | |
ID | 4920625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 321214 |
End bp | 321822 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640161823 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001092430 |
Protein GI | 127511233 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGAGA AAAAATTAAC TCGCTCGGAG CTGAAACGCG CGGCCATCGT CGAGGCAGCC AGTGTGGAGT TTCAAAATAA GGGATTTAGC CTAGCGAGTA TGGATGACAT TGCCAAACGT GCCGATGTGT CCAAGCGCAC CGTGTACAAC CATTTCCCCA GCAAAGAGGC GTTGTTTAGT GCCATCATGC TCGAGATGAT GGAGATGCTG TGCGCCTTCG AATCTTTACC CTTCAGCGCC GAGGAGAGCC TGGCTTCACA GTTGACCCAA TTGGTGCAGC ACGAGATTAA GCTGTTAAGT GCTAAGGGGT TTATCGATAC GGCCAGGGTG ATTATTGCCG AGGCGATTCA CAAGCCGGAG CTGATTCAAG ACGCAATGTC GGAGTTTAGT AAGCAGGAGT CGCCACTGGC GAACTGGTTC AATCAGGCAA TCGCCGCCGG TGCGTTAAAG GCGAAGGATA GCGAGATCTT GGTGGTTCAG TTTACCGCGG TGATCAAGGC CTACTGCTTC TGGCCTCAGT TGATCCAGGG TGAGCCTCTG CCGAGCCAGG CCAAGCTCGA TGAGATAACC CAAACTGTGG TCGAGATGAT CATCAAGCAA TATACCTAG
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Protein sequence | MIEKKLTRSE LKRAAIVEAA SVEFQNKGFS LASMDDIAKR ADVSKRTVYN HFPSKEALFS AIMLEMMEML CAFESLPFSA EESLASQLTQ LVQHEIKLLS AKGFIDTARV IIAEAIHKPE LIQDAMSEFS KQESPLANWF NQAIAAGALK AKDSEILVVQ FTAVIKAYCF WPQLIQGEPL PSQAKLDEIT QTVVEMIIKQ YT
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