| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0293 |
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| Symbol | |
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| ID | 4920560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 313397 |
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| End bp | 314947 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640161817 |
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| Product | threonine dehydratase |
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| Protein accession | YP_001092424 |
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| Protein GI | 127511227 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGCCC TTGCCTCTCA GTCTCAGCTG GATCTCGCCC ACTATTATCT GCAGAAGATC
TTGCTGTCGT CGGTTTATGA TGTTGCCAAG GTGACGCCGC TCTCCAGCCT CAACAAGCTG
TCGGCGCGCC TCGGCTGTCA GGTATTTCTC AAGCGTGAAG ATATGCAGCC GGTACACTCC
TTTAAGCTGC GCGGCGCCTA CAACCGTATC GCCGAGCTGA GTCAGGAGGA GTGTCAGCGG
GGCGTGGTGT GCGCTTCGGC GGGAAACCAT GCTCAGGGGG TCGCCATGTC GGCCTCGGCG
CGTGGGGTGA GTGCGGTGAT CGTCATGCCC CAGACCACGC CGGATATCAA GGTGGATGCG
GTGCGCCGCC TCGGCGGCAC TGTGGTGCTA TATGGCCAGT CCTTCGACAT GGCCAACGAG
CATGCTCAGC AGCTTGCCCG CGATGAGGGA CGTATCTATG TGGCGCCATT CGACGATGAG
GCGGTGATTG CCGGGCAAGG CACGGTCGCC CAGGAGATGC TGCAACAGCA GCGGGATCTC
GAGGTGGTGT TCGTGCCCGT GGGCGGCGGC GGCCTGATCG CTGGTATTGC GGCCTACTAT
AAGGCGGTGA TGCCCCAGGT GAAGATCATC GGCGTCGAGC CGGAAGACTC GGCCTGCCTC
AAGGCGGCAC TGGAAGCCGA CGAGCGGGTG GTGCTGTCTC AGGTGGGCTT GTTTGCCGAT
GGCGTGGCGG TGAAGCAGAT AGGCGCCGAG CCCTTCAGGT TGGCCCGCGA GTATGTGGAT
CAGGTGGTGA CCGTCACTTC CGATGAGATC TGCGCCGCGG TCAAAGATAT CTTCGAGGAT
ACCCGCGCCA TCGCCGAACC GGCGGGGGCG TTGTCACTGG CGGGGCTAAA GAAGTATATC
GGTGACGAGG GCAAGGGGCA GAAGGTGGCG GCGATTCTCA GCGGCGCCAA TGTCAACTTC
CACAGCCTGC GATACGTGTC CGAGCGTTGC GAACTGGGTG AACAGAAGGA GGCGATTCTG
GCGGTGAAGG TGCCGGAGCA TCCGGGGATC TTCCTGCGCT TCTGTGAGCT GCTGGAAAAG
CGCGCCATGA CAGAGTTTAA TTACCGCTTC TCTAGCCGTG AGAAGGCGGT GGTGTTTGCC
GGTATTCGCC TGTCTCATGG CCAAGCTGAG CTGGACGAGA TAGTGGCACG GCTCGAGGGC
GATGGTTTCG AGGTGCAGGA CCTGTCTCAC GACGAGACCG CCAAGCTGCA CGTGCGCTAC
ATGGTCGGCG GCCTGCCGCC AGAGCCGCTG CAGGAGCGTC TGTTTAGCTT CGAGTTTCCC
GAGCATCCTG GCGCCCTGTT TAAGTTTCTC ACTACCCTGC GCAGCAAGTG GAACATCAGC
CTGTTTCACT ACCGCAACCA TGGCGCGGCC TACGGGCGGG TGTTGGCCGG TTTCGAGGTG
CCCGAGAGCG ATAGCGTCGC CTTCCAGCAG TTTCTTACCG AGCTGGGCTT CGTCTATCAA
GAAGAGACCC AAAGCCCGGC CTATAAGCTG TTTCTGGATA ATCGCGACTA A
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| Protein sequence | MLALASQSQL DLAHYYLQKI LLSSVYDVAK VTPLSSLNKL SARLGCQVFL KREDMQPVHS
FKLRGAYNRI AELSQEECQR GVVCASAGNH AQGVAMSASA RGVSAVIVMP QTTPDIKVDA
VRRLGGTVVL YGQSFDMANE HAQQLARDEG RIYVAPFDDE AVIAGQGTVA QEMLQQQRDL
EVVFVPVGGG GLIAGIAAYY KAVMPQVKII GVEPEDSACL KAALEADERV VLSQVGLFAD
GVAVKQIGAE PFRLAREYVD QVVTVTSDEI CAAVKDIFED TRAIAEPAGA LSLAGLKKYI
GDEGKGQKVA AILSGANVNF HSLRYVSERC ELGEQKEAIL AVKVPEHPGI FLRFCELLEK
RAMTEFNYRF SSREKAVVFA GIRLSHGQAE LDEIVARLEG DGFEVQDLSH DETAKLHVRY
MVGGLPPEPL QERLFSFEFP EHPGALFKFL TTLRSKWNIS LFHYRNHGAA YGRVLAGFEV
PESDSVAFQQ FLTELGFVYQ EETQSPAYKL FLDNRD
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