| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0289 |
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| Symbol | |
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| ID | 4920601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 308543 |
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| End bp | 310216 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640161813 |
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| Product | acetolactate synthase 2 catalytic subunit |
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| Protein accession | YP_001092420 |
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| Protein GI | 127511223 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAAG GGCAGAAGAT CAGAGGCGCA GACGCCGTCA TCAAGGCATT GGCCGCGCAC
GGCGTGACCA CGGTATTTGG TTATCCAGGT GGCGCCATCA TGCCCATCTA CGATGCCCTG
GTCGGTGCGC CGGTTGAACA TCTGCTCAGT CGTCATGAAC AGGGCGCCGC CTTCGCCGCC
GTAGGGTATG CAAGAGCCAG CGGCAAGACG GGGGTCTGCT TCGCCACCTC GGGCCCAGGA
GCGACCAATC TGGTGACCGT CTTGGCCGAT GCCCTGCTCG ATTCTGTGCC TCTGGTTGCC
ATCACGGGTC AGGTGTCTAC CGCGGTGATC GGTACAGACG CGTTTCAGGA GATCGACGTG
CTGGGCATGT CGCTCTCCTG CACCAAACAC AGCTTCATGG TGACAGATGT CGAGGAGCTA
GTGCCTACCC TGTACCGCGC CTTCGAAATC GCCGCCTCCG GCCGTCCCGG CCCTGTGCTG
GTGGACATAC CCAAAGATAT CCAGATCGCC CTGCTGGACT ACAAGGCGCC GCTCCAGGCG
ATACAACCCG AACCCCAAGT GGACCCTAGC CTGCTCGAGT CTGCTAAGAA TCTGATTGCC
CAGGCACAGC GCCCCATGCT CTACGTGGGC GGCGGTGTCG GCATGGCGGG CGCGGTCGAG
CAGCTGCGCG ACTTCATCAA TCAGAGCGGC ATGCCCTCGG TCGCGACCCT CAAAGGGCTT
GGCAGCATAG CCCATGACCA TCCGGGTTAT CTGGGAATGC TGGGCATGCA CGGCGGTAAG
GCGGCCAACC TGGCGGTGCA GGAGTGCGAC CTGCTGCTGG TGGTCGGCGC CCGTTTCGAC
GACAGGGTTA CCGGCCGTCT GGCCAGCTTC GCCGAGCATG CCAAGGTGGT GCATCTGGAT
ATCGATATCG CCGAGCTGGG TAAGCTTAGA CGCCCGGATG TCGCCATCGC CGGGGATCTG
CGTGAGATCT TGCCTGCGTT GGCGCAGCCG CTGGAGATCG CCCCCTGGCT GGCCGAGGTG
GCCAGATTGA AAGCCCAGCA TGCCTGGAGC TACGACAGAC CCGGTGAACT GATCTTCGCG
CCTAAGCTAC TCAACCGTCT GGCGGCTAAA TTGCCTGAGG ACAGCGTGGT GGCCTGCGAC
GTGGGTCAGC ATCAGATGTG GGTAGCCCAG CATATGTGGT TCAGACGCCC GGAAGATCAC
CTCTCAAGCG CAGGTCTGGG CACCATGGGG TTTGGTCTGC CGGCGGCGAT CGGCGCCAAG
GTGGCCAGAC CCGACGCCTG TGTGGTGGCC GTCTCAGGCG ATGGTTCTTT CATGATGAAT
GTGCAGGAAC TGACCACCAT CAAGCGACGT CAGATCCCGC TCAAGATCCT GCTGATCGAT
AACCAGAAGC TGGGGATGGT GAAGCAGTGG CAACAACTGT TTTTTGAAGA ACGTTTCAGC
GAGACCGACC TTTCCGATAA CCCGGACTTT GTCACTATGG CCTCGGCCTT CGACATCCCG
GGACGCACTA TCACTCAGGC GGGTGAGGTG GAGTCGGCGC TCGACGAGAT GCTCGATGCA
AAGGGGCCTT TCTTACTGCA CGTAAGAATC GACGAGGCCC ACAACGTTTG GCCTTTGGTG
CCGCCCGGCG CCAGTAACCG CGACATGATG GATGAGATGG AGAAGCAGAC ATGA
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| Protein sequence | MEQGQKIRGA DAVIKALAAH GVTTVFGYPG GAIMPIYDAL VGAPVEHLLS RHEQGAAFAA
VGYARASGKT GVCFATSGPG ATNLVTVLAD ALLDSVPLVA ITGQVSTAVI GTDAFQEIDV
LGMSLSCTKH SFMVTDVEEL VPTLYRAFEI AASGRPGPVL VDIPKDIQIA LLDYKAPLQA
IQPEPQVDPS LLESAKNLIA QAQRPMLYVG GGVGMAGAVE QLRDFINQSG MPSVATLKGL
GSIAHDHPGY LGMLGMHGGK AANLAVQECD LLLVVGARFD DRVTGRLASF AEHAKVVHLD
IDIAELGKLR RPDVAIAGDL REILPALAQP LEIAPWLAEV ARLKAQHAWS YDRPGELIFA
PKLLNRLAAK LPEDSVVACD VGQHQMWVAQ HMWFRRPEDH LSSAGLGTMG FGLPAAIGAK
VARPDACVVA VSGDGSFMMN VQELTTIKRR QIPLKILLID NQKLGMVKQW QQLFFEERFS
ETDLSDNPDF VTMASAFDIP GRTITQAGEV ESALDEMLDA KGPFLLHVRI DEAHNVWPLV
PPGASNRDMM DEMEKQT
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