| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0278 |
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| Symbol | |
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| ID | 4920675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 295678 |
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| End bp | 296769 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161802 |
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| Product | branched-chain amino acid aminotransferase |
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| Protein accession | YP_001092409 |
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| Protein GI | 127511212 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01123] branched-chain amino acid aminotransferase, group II |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00360847 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAATAA ATTATAATTT AAAACCTGCG TCTGAACGCC GAACACAGCA GTTTAAGCCC
GAAACCAATG TTGGCTTTGG CAATCTAAGA ACTGACCATA TGTTTTTGAT GGATTACCGC
GATGGGGAGT GGCGGGATCC TAGGGTAGTC CCTTACGGAC CATTCGAGAT GGCACCGGGT
GCCATGGCAC TGCACTATGG GCAATCCATC TTCGAGGGCG CTAAGGCCTT CATGCATGAT
GATGGTGAGA TCTATACCTT CCGTTTAAAC AAGAATGCCG AGCGTCTCAA CCTGAGTGGT
GAGGTGGTCT GTATTCCTCC TGTTCCCGAG GCGATGCAGC TGGCGGGTAT CAATGCCCTG
ATCGACGTCG ACAGGCTGTG GTTTCCGATG CAGGATGGGG CCTGTCTCTA TATTCGTCCC
TTCGTGTTTG CCACCGAAGA CCGACTCTCG GTGAGCCCGA GCCAGCAATA TACCTTCTGT
GTCATGTTGA GCCCAAGTGG TGCCTATTAT GCCGATGGCT TCGATAAGGC GATTCGTCTG
CTGATCACCG AGCGTTTCCA CCGCGCGGTA TCGGGTGGCA CGGGTGCTTC AAAGGCGGCG
GGTAACTATG CTGCTTCGCT CAGGGCGGGT AAGGCCGCAG CGGAATATGG TGCGGCCCAG
GTATTGTATC TCGATGCCAA CAACAAGCAG ATCGAAGAGG TGGGTGCCAT GAACCACTTC
CATGTGCTTA AAGATGGCAC CATTATCATA CCTAAATTCA CCGACACCAT TTTGAAGTCG
ATTACCTCGC AATCCATCAT GGAGCTGGGA GAAGCGCTCG GCTGTGAGGT GCGCCAAGAG
ACGGTCATGC TGGACCAGTT TATTGCCGAT ATCGAATCTG GTGAGATCGT CGAGGCCGGT
GGTTTTGGTA CCGCGGCCGT GGTGTCGCCT GTGGGCTCCT ATATTTTCGA AGACCATAGA
GTATTGACGG TCGGTGATGG TCAGGTGGGC GAGCATACCC GCCGCATCTA TCAGGTGCTG
ACGGATATCC AGAAGGGTAA GCGTCAGGGT CCTGAAGGCT GGATGCAAAA GGTTGAGCGC
GTCGCGCCTT AA
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| Protein sequence | MQINYNLKPA SERRTQQFKP ETNVGFGNLR TDHMFLMDYR DGEWRDPRVV PYGPFEMAPG
AMALHYGQSI FEGAKAFMHD DGEIYTFRLN KNAERLNLSG EVVCIPPVPE AMQLAGINAL
IDVDRLWFPM QDGACLYIRP FVFATEDRLS VSPSQQYTFC VMLSPSGAYY ADGFDKAIRL
LITERFHRAV SGGTGASKAA GNYAASLRAG KAAAEYGAAQ VLYLDANNKQ IEEVGAMNHF
HVLKDGTIII PKFTDTILKS ITSQSIMELG EALGCEVRQE TVMLDQFIAD IESGEIVEAG
GFGTAAVVSP VGSYIFEDHR VLTVGDGQVG EHTRRIYQVL TDIQKGKRQG PEGWMQKVER
VAP
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