Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0276 |
Symbol | |
ID | 4920688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 292756 |
End bp | 294273 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640161800 |
Product | flavocytochrome c |
Protein accession | YP_001092407 |
Protein GI | 127511210 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00106606 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCACAACA GAAGAAATTT TTTAAAGCTT AGTGCGGGTG CAGCCATAGG TGGCATGGCC GCCGCGCTCC CCAGCACCAG CCTGGCCAAA GAGTGCCAGG CGATTAAATG GGACGAGTCT CATGATGTCA TAATAGTCGG TTCAGGCTTC GCCGGACTCT CTGCCGCCCT CAACACCAAG CGTCAAGGTA TTAAATCCGT ATTGGTACTC GAGAAGATGC AGGTCATCGG CGGTAACTCG GCGATCAACG GCGGCTGGCT AGCCATTCCC AAGAATCCCA TTCAACTGGC CCAGGGCATC GAAGACGACT CACCAGAAGA GCTGGTCAAA GATCAGATCA TCTCGGGTCG CGGCATGCAA AATGAGACGG CGCTGCGCCA GATCGCCAAT AGAGCCTTAG ATGCCTACGA ACTATGTATC GGCACGGGCG TAAAATTTCG CGACGGCTTT AACATTCAAG TCGGCGGCCA TAACAAGGCC CGCGCCATAC GTACTCAACA CGGCTCGGGT GGCGATATCA CCACCAAGCT GTACGAGGCG GGTGTTAGAG AAGGTGTCGA ATACCGTCTA CAACATTACA TCGAAGACTT CATCATGGAC GGTCAAGAGA TCGTCGGCGT CAAGGTGCGT AAGAACTACC GCTTCCCCGA CATCACCACT GGCAGCACGA TTTACATCAG AGCGAACAAG GCGGTCATCC TGGCCAATGG TGGTTTCGCC CGTAACATGA AACTCAGGGA GATGGTCGAC CCTTCACTGG ACCCGACACT CGACTGCACC AATGCCCTTG GCGCCACCGG CGAGGTCACC CTCACCGCCA TGGCACACGG CGCCCTGCCC GTGCACATGA ACCTAATCCA GACGGGTCAC TGGGGCTCCC CGGACGAGGG CGGATTTGGC TGGTCAAACG CCCTGCTCTC CATCGGCTGG CACCAGGGCG CGGCCATCAG CGTCCTCAAT GGTAAGCGTT TCATGGACGA GCGTGCAGAT CGCAAGACCT GCTCCGAAGC CATCATGAAG AACCGCTACC CGGACAACAG TCCCGCCTAC CCTGTGGTCT TATTTAACTA CGAGAAATAC AAGGACGACG ACCGTGTGGT GCGTGCACTG CGCGACAAGA TGGCCTGGAA ACTGGACAGC CTCGATGAGA TAGCCAGCAA ATTCAACATC CCTGCGGCCG AGCTCAAGCG CTCCATTAAC GAATACAACG GCCACGTTAA CGCCCGCAAA GACCCACTGT TCAACCGTAA GATGGACACG GCCGAAGTAC TCACCGGCCC CTTTGTGGTC TCGCGCATCT GGCCTAAGGT GCACTACTGC ATGGGCGGTC TGAAGACCGA TCTCGCCGCC CGAGTTATCG ATGGCCGCTC CATGTCGCCC ATCAAGAAGC TCTACGCCAT AGGAGAGGTC ACGGGTGGCA TTCACGGCGA GGCCAGACTC AGCTCAACCT CTTGTCTCGA ATGTTTGGCG ATGGGAATCG TCGTCTCTGA AACCATCAAA TCTGACGCGC AGGCTTAA
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Protein sequence | MHNRRNFLKL SAGAAIGGMA AALPSTSLAK ECQAIKWDES HDVIIVGSGF AGLSAALNTK RQGIKSVLVL EKMQVIGGNS AINGGWLAIP KNPIQLAQGI EDDSPEELVK DQIISGRGMQ NETALRQIAN RALDAYELCI GTGVKFRDGF NIQVGGHNKA RAIRTQHGSG GDITTKLYEA GVREGVEYRL QHYIEDFIMD GQEIVGVKVR KNYRFPDITT GSTIYIRANK AVILANGGFA RNMKLREMVD PSLDPTLDCT NALGATGEVT LTAMAHGALP VHMNLIQTGH WGSPDEGGFG WSNALLSIGW HQGAAISVLN GKRFMDERAD RKTCSEAIMK NRYPDNSPAY PVVLFNYEKY KDDDRVVRAL RDKMAWKLDS LDEIASKFNI PAAELKRSIN EYNGHVNARK DPLFNRKMDT AEVLTGPFVV SRIWPKVHYC MGGLKTDLAA RVIDGRSMSP IKKLYAIGEV TGGIHGEARL SSTSCLECLA MGIVVSETIK SDAQA
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