Gene Shew_0276 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0276 
Symbol 
ID4920688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp292756 
End bp294273 
Gene Length1518 bp 
Protein Length505 aa 
Translation table11 
GC content57% 
IMG OID640161800 
Productflavocytochrome c 
Protein accessionYP_001092407 
Protein GI127511210 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01813] flavocytochrome c 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00106606 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCACAACA GAAGAAATTT TTTAAAGCTT AGTGCGGGTG CAGCCATAGG TGGCATGGCC 
GCCGCGCTCC CCAGCACCAG CCTGGCCAAA GAGTGCCAGG CGATTAAATG GGACGAGTCT
CATGATGTCA TAATAGTCGG TTCAGGCTTC GCCGGACTCT CTGCCGCCCT CAACACCAAG
CGTCAAGGTA TTAAATCCGT ATTGGTACTC GAGAAGATGC AGGTCATCGG CGGTAACTCG
GCGATCAACG GCGGCTGGCT AGCCATTCCC AAGAATCCCA TTCAACTGGC CCAGGGCATC
GAAGACGACT CACCAGAAGA GCTGGTCAAA GATCAGATCA TCTCGGGTCG CGGCATGCAA
AATGAGACGG CGCTGCGCCA GATCGCCAAT AGAGCCTTAG ATGCCTACGA ACTATGTATC
GGCACGGGCG TAAAATTTCG CGACGGCTTT AACATTCAAG TCGGCGGCCA TAACAAGGCC
CGCGCCATAC GTACTCAACA CGGCTCGGGT GGCGATATCA CCACCAAGCT GTACGAGGCG
GGTGTTAGAG AAGGTGTCGA ATACCGTCTA CAACATTACA TCGAAGACTT CATCATGGAC
GGTCAAGAGA TCGTCGGCGT CAAGGTGCGT AAGAACTACC GCTTCCCCGA CATCACCACT
GGCAGCACGA TTTACATCAG AGCGAACAAG GCGGTCATCC TGGCCAATGG TGGTTTCGCC
CGTAACATGA AACTCAGGGA GATGGTCGAC CCTTCACTGG ACCCGACACT CGACTGCACC
AATGCCCTTG GCGCCACCGG CGAGGTCACC CTCACCGCCA TGGCACACGG CGCCCTGCCC
GTGCACATGA ACCTAATCCA GACGGGTCAC TGGGGCTCCC CGGACGAGGG CGGATTTGGC
TGGTCAAACG CCCTGCTCTC CATCGGCTGG CACCAGGGCG CGGCCATCAG CGTCCTCAAT
GGTAAGCGTT TCATGGACGA GCGTGCAGAT CGCAAGACCT GCTCCGAAGC CATCATGAAG
AACCGCTACC CGGACAACAG TCCCGCCTAC CCTGTGGTCT TATTTAACTA CGAGAAATAC
AAGGACGACG ACCGTGTGGT GCGTGCACTG CGCGACAAGA TGGCCTGGAA ACTGGACAGC
CTCGATGAGA TAGCCAGCAA ATTCAACATC CCTGCGGCCG AGCTCAAGCG CTCCATTAAC
GAATACAACG GCCACGTTAA CGCCCGCAAA GACCCACTGT TCAACCGTAA GATGGACACG
GCCGAAGTAC TCACCGGCCC CTTTGTGGTC TCGCGCATCT GGCCTAAGGT GCACTACTGC
ATGGGCGGTC TGAAGACCGA TCTCGCCGCC CGAGTTATCG ATGGCCGCTC CATGTCGCCC
ATCAAGAAGC TCTACGCCAT AGGAGAGGTC ACGGGTGGCA TTCACGGCGA GGCCAGACTC
AGCTCAACCT CTTGTCTCGA ATGTTTGGCG ATGGGAATCG TCGTCTCTGA AACCATCAAA
TCTGACGCGC AGGCTTAA
 
Protein sequence
MHNRRNFLKL SAGAAIGGMA AALPSTSLAK ECQAIKWDES HDVIIVGSGF AGLSAALNTK 
RQGIKSVLVL EKMQVIGGNS AINGGWLAIP KNPIQLAQGI EDDSPEELVK DQIISGRGMQ
NETALRQIAN RALDAYELCI GTGVKFRDGF NIQVGGHNKA RAIRTQHGSG GDITTKLYEA
GVREGVEYRL QHYIEDFIMD GQEIVGVKVR KNYRFPDITT GSTIYIRANK AVILANGGFA
RNMKLREMVD PSLDPTLDCT NALGATGEVT LTAMAHGALP VHMNLIQTGH WGSPDEGGFG
WSNALLSIGW HQGAAISVLN GKRFMDERAD RKTCSEAIMK NRYPDNSPAY PVVLFNYEKY
KDDDRVVRAL RDKMAWKLDS LDEIASKFNI PAAELKRSIN EYNGHVNARK DPLFNRKMDT
AEVLTGPFVV SRIWPKVHYC MGGLKTDLAA RVIDGRSMSP IKKLYAIGEV TGGIHGEARL
SSTSCLECLA MGIVVSETIK SDAQA