Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0272 |
Symbol | |
ID | 4920772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 289060 |
End bp | 289803 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640161796 |
Product | cupin 2 domain-containing protein |
Protein accession | YP_001092403 |
Protein GI | 127511206 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.181215 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000021691 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGATGAAAC TAAAAATGCT CTTAGGTGTT GCCGCACTGG CTTCAACCAC AGCCGTGGCT CAAGGCCCGC AATGCAATCA TGCACAGCTG CCATTTCAGC AGATGACGCC AGTGCCTTAC GACAGCACAC CTTACTCACC ACAGGACACT ATGCCTGAGC AGTGCAGTAA CCCTGAAGTT GAGGCCTATA TTGCGGATTG GGAAGCGGGC AAGATCGACT TCACCACCAT CAAGGCCAAC GACAGCATCG CCGCCGATCA GCGTTTCTGC AAGACCCTGG ATGACGATGG CAACATTTCA GAAGTCAAAG ACTGTGATCG TACTAAGTCA CCCGTTGGTT ACATCTGGAA AGAGCTATCT GATAGCCCTG TGGTGATTGG TATTACCGAT GGTGGCAAGT CAGACCATGC ACCTCACTTC CACGGTCAAC CTGAATGTTA CTATGTGGTC AACGGCGAGG GACAAACCCT GGCGGACAAC CAATTTAAGA AGCTGGGTAC TGGCCAATAC TTCTACATTC CGGGTGCCAC CATCCACAAC ACGCCTATCA TGTCTGAAAA AGGCCTTGGC GTAATCTATT GGTATCCGAA CAACGCCCAC TTCGACGGCT TCAAATACTA CTGGCGTAAA GACGTGAAAA ACCTACGCGT TGCCGAAGAA GCCTTCGACC GCGTAGATGC CATACGTAAG CGCGACCTAA ACTTAGGCCC CTACGGCACC AACGAAGCCT TCTTCAAGAA ATAG
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Protein sequence | MMKLKMLLGV AALASTTAVA QGPQCNHAQL PFQQMTPVPY DSTPYSPQDT MPEQCSNPEV EAYIADWEAG KIDFTTIKAN DSIAADQRFC KTLDDDGNIS EVKDCDRTKS PVGYIWKELS DSPVVIGITD GGKSDHAPHF HGQPECYYVV NGEGQTLADN QFKKLGTGQY FYIPGATIHN TPIMSEKGLG VIYWYPNNAH FDGFKYYWRK DVKNLRVAEE AFDRVDAIRK RDLNLGPYGT NEAFFKK
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