| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0250 |
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| Symbol | |
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| ID | 4923235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 268605 |
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| End bp | 269783 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640161774 |
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| Product | MerR family transcriptional regulator |
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| Protein accession | YP_001092381 |
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| Protein GI | 127511184 |
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| COG category | [H] Coenzyme transport and metabolism
[K] Transcription |
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| COG ID | [COG0789] Predicted transcriptional regulators
[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.757542 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTATTTGA TTTCTGAACT GGCAGCGAAG GCGGGTATCT CTCGCACCAC CTTACTCTAT
TACGAGAAGT TAGGGCTGAT TAACGGCCAG CGTCTTGACA ATGGATATCG CTATTACAGC
GAAAACGATT TGCAGCGACT GTTATTGATT CAGCAACTTC AAAGCGCAGG ACTCTCATTG
AAGGAGTGCG AACAATGCTT GGACGCGAAG TTAAGTAGAA GCTTATTGGA AAATCGGCTA
ACGCAACTCA ACCATGAGAT TGATAAAAAA ATCCACGCTC GTGAGTTGCT ACTGGCGTTA
CTTGGGGAAC GTCCACAAAG AGAGTTACAC CATTCTCTGA GTCAAAGTGC ACCTAACGCT
TACTTAAACT GGTTAAGTAC GCAGGGTTAC AGTGAAAAAG AAGCGCTCAG ATTAAAGTGG
TTATCAAAAG ATATGAACGA ACACGAGAGT TACATGAAAG ACTTTATGAC GGTCTTTGCA
ACATTAGAAA GATGGGGGCC AGGGAGTCAC AAGGACTCTT TAAAAGCGAT TTCATTAATG
TCTCCTCAGA CAATGACCGA TATTTTAGAC ATTGGTTGTG GCACTGGCAC CTCAACATTA
CTGCTAGCCG ATAACAGTAT CGCGCACATT ACCGCCGTGG ATAATGAGCC TATCGCCATC
GAACAGCTCA ATAAAAAAAT CCAAAATGCA CAGTTACATG AGCGGATTTC TCCTGTTTGT
GCCTCCATGA CGGAACTGCC ATTTCAGGCA AAGAGTTTTG ATGCCATTTG GGCGGAAGGC
TGCGTCTACA TTATGGGAAT GGAGAACGCA CTAAAACAAT GGAAGCCTCT GTTAAAAGAT
AATGGCGTCT TGATGGTAAG TGACTTGGTT TGGCTCACTG ACTCTCCCGA CGAAGAGACA
AAACAGTTTT GGCTGGCAGA TTACCCAGAT ATTCAATCGA TACCTAAACG ACTCACTCTG
TTCAAAAAGC ATGGCTACGA CGTGATCGAA CACTTCTCAT TAGGCGTCGA TGCATGGCAA
AACTACTGGC AACCGCTGCA AGGCCGAGTT GAGGAATTAC AAGCTGTTAT GCCTGCGTCC
CAAGCGTTAC TGGACATTAA GAAAGAGATT TCAGTTTACG AGCGCAGTGC CGCAAAAGAC
TTTACCTATC AGTACTTTAT TTTAAAACTT GCAAACTAG
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| Protein sequence | MYLISELAAK AGISRTTLLY YEKLGLINGQ RLDNGYRYYS ENDLQRLLLI QQLQSAGLSL
KECEQCLDAK LSRSLLENRL TQLNHEIDKK IHARELLLAL LGERPQRELH HSLSQSAPNA
YLNWLSTQGY SEKEALRLKW LSKDMNEHES YMKDFMTVFA TLERWGPGSH KDSLKAISLM
SPQTMTDILD IGCGTGTSTL LLADNSIAHI TAVDNEPIAI EQLNKKIQNA QLHERISPVC
ASMTELPFQA KSFDAIWAEG CVYIMGMENA LKQWKPLLKD NGVLMVSDLV WLTDSPDEET
KQFWLADYPD IQSIPKRLTL FKKHGYDVIE HFSLGVDAWQ NYWQPLQGRV EELQAVMPAS
QALLDIKKEI SVYERSAAKD FTYQYFILKL AN
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