Gene Shew_0225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0225 
Symbol 
ID4923913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp238547 
End bp239140 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content57% 
IMG OID640161748 
Productphosphoheptose isomerase 
Protein accessionYP_001092356 
Protein GI127511159 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0279] Phosphoheptose isomerase 
TIGRFAM ID[TIGR00441] phosphoheptose isomerase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0706313 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.114772 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAGAAC GTATTAAAGA CAGTTTTACC CACTCTATCC AGACCAAGAT CGATGCGGCT 
GAGGCGCTAC CTGAGTCTAT TGAGAAGGCG GCCGAGATGA TGGTGCAGTG TCTACTTGGC
GGCAACAAGA TCTTAGCCTG TGGTAACGGT GGCAGCGCCG GCGATGCACA GCATTTCTCT
GCTGAGCTGC TGAACCGCTA CGAGATCGAG CGTCCGCCAC TACCGGCCAT CGCCCTGACA
ACCGACACCT CGACCATCAC CGCGATTGGT AACGACTACA GCTATGACGA GATCTTCTCT
AAGCAGATCC TGGCACTGGG TCAACCTGGC GACATCTTGC TGGCCATCTC GACCAGTGGT
AACTCGGGTA ACGTGATCAA GGCGATGGAA GCGGCGCTAA GCCGTGACAT GACGATCGTG
GCCCTCACGG GTAAGGATGG CGGCGCCATG GCCGGTCTGA TGGGCACAAA CGACGTGGAA
GTGCGCGTAC CTTCAAACGT CACCGCGCGT ATTCAGGAAG TGCACCTGTT AGTGATCCAC
TGCCTGTGCG ACAACATCGA CCGCACCCTC TTCCCGCAGG ATGACCAGGC ATGA
 
Protein sequence
MLERIKDSFT HSIQTKIDAA EALPESIEKA AEMMVQCLLG GNKILACGNG GSAGDAQHFS 
AELLNRYEIE RPPLPAIALT TDTSTITAIG NDYSYDEIFS KQILALGQPG DILLAISTSG
NSGNVIKAME AALSRDMTIV ALTGKDGGAM AGLMGTNDVE VRVPSNVTAR IQEVHLLVIH
CLCDNIDRTL FPQDDQA