| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0222 |
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| Symbol | |
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| ID | 4923879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 236089 |
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| End bp | 236964 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640161745 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001092353 |
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| Protein GI | 127511156 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.108067 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAAGA TCCCCCCACT CAGGGCGCTG CAGGTATTCG AGGCCGCCGC CCGTTTGCAG
CACTTCTCCC GGGCTGCGCA GGAGCTGTGC ATTACCCAGA GTGCGGTGTC TCATCAGGTT
CGTCTACTGG AGGAACACTT CGCCCTGCCC CTGTTCAGGC GCGAGGGCCG CAGCCTGAGA
CTCACCGACA AGGGCGAGCA GCTGTTTCAG GAGACGGCGA GGATTTTCAA TGAGCTGGGA
GAGCTAAATC TCAGGTTACT GGGCGAGAAG CCAGAGGCGC TACGTCTGGC GGTCTACAGC
TCCTTCGCGG TAAAGTGGCT GATCCCCAGG CTCAGCGGCT TTCGCCGCCT ACATCCAGGG
ATTCAGGTAC GCCTGGATAT GATCACCGAA GACCCTGTGC TCTCCCACAG CAGCGCCGAC
ATGTTTATCA CGGGCCAGCA AGATCAGAAG GGCTACTGGC AACAGCTACT GCACGCCGAG
CGCTTGATCC CCGTCTGCAG CCCGGAGCTT ATCAGCAGCA GCGACAAGCT GGATCTCGAC
TGGCTCAGCA CCCAGCAGCT GCTCACCGTA GATGAGGGAC CACTGGGGCT GGACTGGCAG
CGCTGGTTTG AACATCATCG AGTGGCTCAA CCCGAGGAGG AACAACAACA GCTCTTCAGC
CATGTGTTGA TGGCGATCGA GGCAGCGATT GCCGGTCAGG GGGTGGCCTT GGCCTCAGAC
TTCATGGTGC TGGATGATAT CGCCAAGCAG CGCCTGGTGG CCCTTCCCTT TGCCGGCATA
GATACCGGCT TCGAGTTTAA CTTCCTCTGC AAGCAGCGCC GCCTGCAGGA GCCCGCCATC
GCCGCCTTCG TCCACTGGTT GACTCAGCAG CACTAG
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| Protein sequence | MRKIPPLRAL QVFEAAARLQ HFSRAAQELC ITQSAVSHQV RLLEEHFALP LFRREGRSLR
LTDKGEQLFQ ETARIFNELG ELNLRLLGEK PEALRLAVYS SFAVKWLIPR LSGFRRLHPG
IQVRLDMITE DPVLSHSSAD MFITGQQDQK GYWQQLLHAE RLIPVCSPEL ISSSDKLDLD
WLSTQQLLTV DEGPLGLDWQ RWFEHHRVAQ PEEEQQQLFS HVLMAIEAAI AGQGVALASD
FMVLDDIAKQ RLVALPFAGI DTGFEFNFLC KQRRLQEPAI AAFVHWLTQQ H
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