Gene Shew_0220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0220 
Symbol 
ID4923840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp234325 
End bp235020 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content57% 
IMG OID640161743 
Productphosphoglycolate phosphatase 
Protein accessionYP_001092351 
Protein GI127511154 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0486776 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCCC AATCTATTAA GGCGATCGCC TTCGATCTCG ACGGCACGCT TATCGACAGC 
GTGCCGGATC TGGCCGCCGC CACCCAAGGC ATGCTCGCCG AGCTTGCCTT GCCCCTGTGC
GACGAGGAGC AGGTGCGAAG CTGGGTAGGC AATGGCGCCG CCAAGCTGGT GGAGCGCGCC
TTGACCTTCG CCCGCGGTGA GGCGGCAACA CAGGCCTATA TCGATGCGGC AATGCCGCTG
TTTAGCAAGC ATTACGAGGC AAATCTGCAG CAGCACAGCC GCCTCTATGA TGGTGTTAAG
TCTGTACTCG AGCAGCTGGT GTCGCTGGGT TACCAACTGG CGATTGTCAC CAATAAGCCC
TATCGCTTCA CCGTGCCTCT GCTGGAGGCC TTCGGCATAG CTCACCTGTT TAATCAGGTG
TTGGGGGGCG ATTCGCTGGA GAAGATGAAG CCGGATCCCC TGCCGCTGAC GCACCTCAAA
CAGGCATGGC AGCTCGAAGA TGAGCAGCTT TTGATGGTGG GTGACTCCCG AAACGATATT
TTAGCGGCGA AAGCGGCGGG TATTTCCTCG ATCGGCTTGA CCTACGGGTA CAACTACGGT
GAAGATATTG GGCTCAGCGG CCCGACGGCC GTTTGTAACA CATTTAGCGA AGTATTGGCG
CAGATAACAG ATAGCCAAAT AGCATTGGAG CAATAA
 
Protein sequence
MKAQSIKAIA FDLDGTLIDS VPDLAAATQG MLAELALPLC DEEQVRSWVG NGAAKLVERA 
LTFARGEAAT QAYIDAAMPL FSKHYEANLQ QHSRLYDGVK SVLEQLVSLG YQLAIVTNKP
YRFTVPLLEA FGIAHLFNQV LGGDSLEKMK PDPLPLTHLK QAWQLEDEQL LMVGDSRNDI
LAAKAAGISS IGLTYGYNYG EDIGLSGPTA VCNTFSEVLA QITDSQIALE Q