Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0220 |
Symbol | |
ID | 4923840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 234325 |
End bp | 235020 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640161743 |
Product | phosphoglycolate phosphatase |
Protein accession | YP_001092351 |
Protein GI | 127511154 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0486776 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCCC AATCTATTAA GGCGATCGCC TTCGATCTCG ACGGCACGCT TATCGACAGC GTGCCGGATC TGGCCGCCGC CACCCAAGGC ATGCTCGCCG AGCTTGCCTT GCCCCTGTGC GACGAGGAGC AGGTGCGAAG CTGGGTAGGC AATGGCGCCG CCAAGCTGGT GGAGCGCGCC TTGACCTTCG CCCGCGGTGA GGCGGCAACA CAGGCCTATA TCGATGCGGC AATGCCGCTG TTTAGCAAGC ATTACGAGGC AAATCTGCAG CAGCACAGCC GCCTCTATGA TGGTGTTAAG TCTGTACTCG AGCAGCTGGT GTCGCTGGGT TACCAACTGG CGATTGTCAC CAATAAGCCC TATCGCTTCA CCGTGCCTCT GCTGGAGGCC TTCGGCATAG CTCACCTGTT TAATCAGGTG TTGGGGGGCG ATTCGCTGGA GAAGATGAAG CCGGATCCCC TGCCGCTGAC GCACCTCAAA CAGGCATGGC AGCTCGAAGA TGAGCAGCTT TTGATGGTGG GTGACTCCCG AAACGATATT TTAGCGGCGA AAGCGGCGGG TATTTCCTCG ATCGGCTTGA CCTACGGGTA CAACTACGGT GAAGATATTG GGCTCAGCGG CCCGACGGCC GTTTGTAACA CATTTAGCGA AGTATTGGCG CAGATAACAG ATAGCCAAAT AGCATTGGAG CAATAA
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Protein sequence | MKAQSIKAIA FDLDGTLIDS VPDLAAATQG MLAELALPLC DEEQVRSWVG NGAAKLVERA LTFARGEAAT QAYIDAAMPL FSKHYEANLQ QHSRLYDGVK SVLEQLVSLG YQLAIVTNKP YRFTVPLLEA FGIAHLFNQV LGGDSLEKMK PDPLPLTHLK QAWQLEDEQL LMVGDSRNDI LAAKAAGISS IGLTYGYNYG EDIGLSGPTA VCNTFSEVLA QITDSQIALE Q
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