| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0213 |
|---|
| Symbol | aroK |
|---|
| ID | 4923605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 228784 |
|---|
| End bp | 229299 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640161736 |
|---|
| Product | shikimate kinase I |
|---|
| Protein accession | YP_001092344 |
|---|
| Protein GI | 127511147 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000106831 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00783685 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAA AACGTAATAT TTTCCTAGTA GGTCCTATGG GGGCTGGCAA AAGCACTATA
GGCCGTCATC TGGCGCAGAT GCTTCATTTA GAGTTCCACG ATTCAGATCA AGAGATTGAA
AACCGTACCG GTGCTGATAT CGCGTGGGTA TTTGACGTTG AGGGCGAAGA AGGTTTTCGT
CGTCGCGAAA CACAAGTTGT TGCCGATTTA ACTGAAAAAC AGGGTATTGT TTTAGCCACT
GGCGGCGGCT CCATTCAGAG TAAAGACATT CGTAACAACT TGTCTGCCCG TGGCATAGTG
GTGTATCTGG AAACCACTAT CGATAAGCAG GTTGCGCGTA CCCAGCGTGA CAAGCGTCGT
CCACTACTTC AGGTTGAAGA CCCAAGAGAA GTGTTAGAAA AGCTTGCTGA GATCCGTAAT
CCACTGTACG AAGAGATTGC CGATGTCATA GTCAAGACTG ACGAGCAGAG CGCAAAAGTT
GTTGCAAATC AAATTATTGA CCAATTAGGC TTCTAA
|
|---|
| Protein sequence | MAEKRNIFLV GPMGAGKSTI GRHLAQMLHL EFHDSDQEIE NRTGADIAWV FDVEGEEGFR
RRETQVVADL TEKQGIVLAT GGGSIQSKDI RNNLSARGIV VYLETTIDKQ VARTQRDKRR
PLLQVEDPRE VLEKLAEIRN PLYEEIADVI VKTDEQSAKV VANQIIDQLG F
|
|---|
| |