| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0212 |
|---|
| Symbol | |
|---|
| ID | 4923582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 226517 |
|---|
| End bp | 228568 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640161735 |
|---|
| Product | type IV pilus secretin PilQ |
|---|
| Protein accession | YP_001092343 |
|---|
| Protein GI | 127511146 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00466535 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0124909 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCTT CTGCCGCGAA AAGCGTTTTA TTAAAAAAGT CGCCCCTGTT TAAAGTGGCC
TTTGGCTTGG CTTTATTATT GGGTGTGGCG CCGTATTCTT CAGCTGCGAA CCGTCTGATT
GATGTCAAAT ACCACTCGAT TGTCGATCAT CAGTTAGAGT TACAACTGGT GTTTGAGGAG
GCCGTGAAGG AGCCTGAGAT CAATCTCAAT GCTTCACCGG CGCAGATCAT CCTTGGATTC
GACGATAGTT TGTCAGGGCT GGAAAAAGAT GTCCTACCGA TCAACAACGT CGGTGTTAAG
TCCATGTCCA CACTGCAGGA CAGCGAACAG CTTAAGGTGC TGGTGGATCT GGCTAAGGTA
AAGGCCTATC AAGGCAAGGT GATGGGGAAT ACCTATCGCC TGACCATTAA CGATGAGGTT
GCCAGTCGCA GTGACGTCGC CGCAAATCCT TTTGTTAACG GCATCAAAAA CATCGACTTC
CATCGCACCG GCGATGGTGG TGGCGAGTTG TTGGTCAAGC TTAATAACTC ATCGGTGGCC
GCGAATGTGG AGCAGGTGGG TGCCAAGCTA GAACTTAAGC TTTACAACAC AGATATTGCC
TCAGATCTTC TTTATGTCAT GGATGTTCAA GACTTTGCGA CGCCAGTAAA GAGCTTTGAG
ACCTTCAAGG ATGAGTTGAC GGCGCGCGTA TTGGTGGATG TCTCGGGTCA ATACGAGTAC
AACTACAAGC AGGAAGGCAA CCTGTTCAGA CTCAACGTGC GTAAGGCTGA GCGTGCTGCT
GTCGTCAAGG AAGAGAAGAA GTATGAAGGC CGTTCGCTTT CTCTTAACTT CCAGAGCATC
TCGGTACGTA CCGTGCTGCA GATCATCGCC GATTATAACA ATTTCAACCT GGTGACCAGT
GATACAGTCG AAGGGGATAT CACCCTGAGA CTTGACGATG TGCCATGGGA CCAAGCCTTG
GATCTGATTC TACAGACTAA GGGACTGGAT AAGCGTATCG AAGGCAATAT CTTGATGGTG
GCACCTGCCG AAGAGATCGC AATTCGCGAG AGCCAAGAGC TGAAGAACCA ACAGGAAGTG
AAAGAGCTTG CTCCGCTCTA TTCTGAGTAT CTGCAGATCA ACTATGCCAA GGCGACAGAT
ATTGCCGAGC TGCTTAAAGG CGACGATGCG TCTCTGTTAT CGGCTCGAGG CACAGTGGCT
GTAGACGACA GAACCAACAC TCTGTTGGTG AAGGATACCG AAGAGAGTCT GGAAAACATT
CACCGCTTGG TGGAGGTGTT GGATATCCCG ATTCGGCAGG TATTGATCGA ATCTCGTATG
GTTACCGTGA AGGATGACGT GTCTGAAGAT CTTGGTATCA AGTGGGGGAT CACAGATCAG
CAAGGCAGTA AGGGTACTTC GGGTAGCTTG GAAGGCGCAA ACGATATCGC CAATGGCGTA
GTGCCAGATA TCGGTGACAG ATTGAATGTT AACCTGCCGG CCGCGGTGGC TAACCCAACC
AGTATTGCTT TTCATGTGGC TAAGTTGGCC GACGGCACCT TGTTGGATCT AGAGCTGAGT
GCACTGGAGC AAGAGAGCAA GGGTGAGATC ATCGCTAGCC CACGTATTAC CACTTCGAAC
CAGAAGGCGG CCTACATCGA GCAGGGTGTT GAGATCCCTT ATGTTGAATC GGCTTCCAGT
GGTGCGGCAA CGGTGCAGTT TAAGAAGGCG GTATTGTCGC TGCGCGTGAC GCCACAGATC
ACACCTGACA ATCGCGTGAT CTTAGATCTT GAGATCACCC AGGACTCTCA GGGTAAGACA
GTCGACACAC CACTCGGTCA GGCGGTTTCT ATCGATACTC AGCGTATCGG TACTCAGGTG
TTAGTCGATC ACGGTGAGAC GATTGTGCTC GGTGGTATCT ACCAGCAACA ATTGATCAAT
CGTGTCAGTA AGGTACCTGT ATTGGGGGAT ATTCCTTTCT TGGGTTACCT CTTTAGAAAC
ACGACCGACA AGAATGAGCG CCAAGAGCTG TTGATCTTCG TGACACCTAA GATCATCTCA
GAGCAACTCT AG
|
|---|
| Protein sequence | MESSAAKSVL LKKSPLFKVA FGLALLLGVA PYSSAANRLI DVKYHSIVDH QLELQLVFEE
AVKEPEINLN ASPAQIILGF DDSLSGLEKD VLPINNVGVK SMSTLQDSEQ LKVLVDLAKV
KAYQGKVMGN TYRLTINDEV ASRSDVAANP FVNGIKNIDF HRTGDGGGEL LVKLNNSSVA
ANVEQVGAKL ELKLYNTDIA SDLLYVMDVQ DFATPVKSFE TFKDELTARV LVDVSGQYEY
NYKQEGNLFR LNVRKAERAA VVKEEKKYEG RSLSLNFQSI SVRTVLQIIA DYNNFNLVTS
DTVEGDITLR LDDVPWDQAL DLILQTKGLD KRIEGNILMV APAEEIAIRE SQELKNQQEV
KELAPLYSEY LQINYAKATD IAELLKGDDA SLLSARGTVA VDDRTNTLLV KDTEESLENI
HRLVEVLDIP IRQVLIESRM VTVKDDVSED LGIKWGITDQ QGSKGTSGSL EGANDIANGV
VPDIGDRLNV NLPAAVANPT SIAFHVAKLA DGTLLDLELS ALEQESKGEI IASPRITTSN
QKAAYIEQGV EIPYVESASS GAATVQFKKA VLSLRVTPQI TPDNRVILDL EITQDSQGKT
VDTPLGQAVS IDTQRIGTQV LVDHGETIVL GGIYQQQLIN RVSKVPVLGD IPFLGYLFRN
TTDKNERQEL LIFVTPKIIS EQL
|
|---|
| |