| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0208 |
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| Symbol | |
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| ID | 4923421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 223714 |
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| End bp | 224793 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640161731 |
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| Product | type IV pilus assembly protein PilM |
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| Protein accession | YP_001092339 |
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| Protein GI | 127511142 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00996609 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTTTCAA ATTTATGGAA GCGTCAGGCT CCGCAGATGG TCGGGATCGA TATCGGTTCC
CACGAGATAA AAGCAATACT GCTGAGTAAG ACTGCTGATG GTTATAAAAT TTTGAGTCAC
GCAGCGGTGC CCGTTAAAAA AGGCGCCGTT AATGATCATG AGATAAGAGA TTCAGACGCG
GTTTTGGAGT CCTTAAGATT GATCAAACGA TCTTTGCCTA AGAGCGTAAA ATATGCGGCG
GCTGCGGTTT CGGGATCGGC TGTGATGACC AAGGTGATCT ACATGGATGC TTCACTGAGT
GAAGAGGAGA TGGAGACCCA GATCGAGATC GAAGCCGACA ACCTTATCCC CTATTCTCTC
GATGAAGTCA GCATAGATTT TGAAACCCTA AGTGTTAATA GCGCCGACCC CTCCAAGGTG
GATGTGCTGC TGAGCGCCTG CCGCACCGAG AATATCGATG CCAGAGTCGA TAGCCTGGAC
GATATTAATC TCGAAGCCAA AGTGATTGAT GTTGAAGGAT ATGCGCTGGG ACGCTCGTTC
GAGTTGGTCG CCGCTCAGTT ACCCGATGGC GCCGAAGATA AGGTGGTTGC GCTGGTGGAT
ATCGGCGCGA ACATGACCAC CTTTGCCGTG GTGGAGAAGG GGGAGACAAC CTTTATCCGC
GAACAGGCCT TTGGTGGTGA GCAGTTTACC CAGTCTATCC TATCTTTCTA CGGCATGTCG
CACGAGCAGG CCGAGAAGGC CAAGCTCGAA GGCGATTTGC CACGCAACTA TATGTTCGAG
GTACTCTCGC CCTTCCAGAC GCAACTGCTA CAACAGATTA AGCGCACCTT GCAGATTTAC
TGTACTTCGA GTGGCAAGGA TAAGGTGGAT CATATCGTCT TGTGTGGTGG CACTTCAAAG
CTGGAAGGCA TGGCTAATCT GCTCACGAAT GAACTCGGCG TTCATACCAT CATTGCCGAC
CCTTTCTTGG GTTGCTTGCA TGCGGACGAG CAAGTGAAGA CACAACTACA GCCCACTATT
AATAAATACA TGGTCGCGTG TGGATTAGCG CTGAGGAGTT ACTCTCAATG GCGAACATAA
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| Protein sequence | MLSNLWKRQA PQMVGIDIGS HEIKAILLSK TADGYKILSH AAVPVKKGAV NDHEIRDSDA
VLESLRLIKR SLPKSVKYAA AAVSGSAVMT KVIYMDASLS EEEMETQIEI EADNLIPYSL
DEVSIDFETL SVNSADPSKV DVLLSACRTE NIDARVDSLD DINLEAKVID VEGYALGRSF
ELVAAQLPDG AEDKVVALVD IGANMTTFAV VEKGETTFIR EQAFGGEQFT QSILSFYGMS
HEQAEKAKLE GDLPRNYMFE VLSPFQTQLL QQIKRTLQIY CTSSGKDKVD HIVLCGGTSK
LEGMANLLTN ELGVHTIIAD PFLGCLHADE QVKTQLQPTI NKYMVACGLA LRSYSQWRT
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