| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0207 |
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| Symbol | |
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| ID | 4923420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 220944 |
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| End bp | 223529 |
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| Gene Length | 2586 bp |
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| Protein Length | 861 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161730 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001092338 |
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| Protein GI | 127511141 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0421791 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTGGT TTAAACGAAT TACCATCGCT CTATTTAGCC TAGCCCTTTT GGGAATAGGT
GCAATTGCTG CGGCCTATTT TTATGTGCTA CCGGACCTCC CCGATGTTAC CACTCTTAAA
ACCGTAAAAT TGCAAACTCC ATTACGAATT TACAGCGCTG ATGGCAAATT AATTTCACAA
TTTGGCGAAA AACGTCGCAT TCCAGTCGAA TATGAGCAGG TACCGCAACA ATTAATTAAT
GCGGTGCTCG ACACAGAAGA CGCCCGCTTC TTCGAACATA AGGGGATAGA CCCCATAGGC
ATCATACGTG CCGCAGTGAT TCTGGCTACC ACAGGTAAGA AGAGCCAAGG GGCAAGTACC
ATCACCCAGC AGGTTGCCCG CGGCTTCTTC CTCTCCAGAG AGAAGACCTA CATTCGTAAG
ATCAAAGAGA TCTTCCTGGC CCTGAAAATC GAGCAAGCCC TGAGTAAGAA AGAGATCTTA
ACCCTCTATC TCAACCGCTC TTTCCTGGGT AACCGCGCCT ATGGTGTCGG AGCCGCCGCT
CAGGTCTACT ATGGCAAGGA ACTCGAGGAG CTCACTCTGC CTGAGATGGC CATGATTGCC
GGTCTGCCAC AGGCGCCTTC TGCCGCCAAC CCTATACGTA ATCCGGCCCG TGCGATGAAT
CGTCGCAACT GGGTACTCAG CCGTATGCTG GAGAAAGAGA ACATTACCCC GGACGAGTAT
CAGGAAGCAA TTAGAGCCCC TATCACCGCC AAGTACCATG GCGCCGAGGT AGAGCTCTAT
GCGCCTTACA TCTCAGAGAT GGCACGCGAC TATCTGGTCG AAAAACTCGG TGAAGAGGAA
GCCTATACCG GCGGTTACAA CGTCTACACC ACTGTCGACT CTCGCCTGCA GATGCTGGCC
CAAGAGGCAC TGCGCAATAA CGTCTACGCC TATGACGAGC GCCACGGCTA TCGCGGCGCG
ACTAAGGTGT TATGGGACGC AGAAGGCACG GCCAAGCTAG ATGAGACCCA AATCGTCACA
CAGCTGAAGC AAACCCAAGG CTTCCAAGGA CTCGAGCCCG CCGCCGTGCT CGAGGTTGCC
GAGCAGAGCG TCAAGGTCAT CAATGCGAAG GGCGAAACCC TCACTCTGGA GTGGGAAGGT
CTTAAGTGGG CGCGCAAGTT CATCAGCAAC AAGCGTCAGG GCAAGGCGCC TAAGACGGCT
GGCGAGATCC TCAAGGCAGG CGAGCAGGTC TGGATCCGCA ACAACGGGAA CATCTGGCAG
CTATCGCAAA TTCCTGAGGT GGCCAGCGCC ATCGTCTCGC TGGATCCTAA GGACGGTGCC
ATCAGGACCC TAGTGGGCGG CTACAGCTTC CACACCAGCC AATACAACCG TGTCACCCAG
GCCAAGCGTC AGCTGGGCTC CAACATCAAG CCCTTCATCT ATACAGGTGC GCTGGAGAAA
GGTTACACCC TGGCGACGCT GATCAACAAC GCGCCGATCA ACAATGCCGA CATACGTCAG
GGCACAGCAT GGCGACCTAA GAACTCGCCC GACAAGTATA CTGGGCCGAC ACGCCTGAGA
GTCGGTCTGG CACAGTCTAT TAACGTCATG TCGGTACGCG CCATGCGCTA TACCGGGCTA
GAGAGCGCTA TCGACACCCT GGTCAAGTTC GGTTTCGACC GCGACGATCT GCCGCAAAAC
GAATCACTGG CGCTGGGTTC ACCTTCGGTG ACGCCGCTGC AGGTGGTCAC CGCCTTCTCG
GTATTTGCAA ATGGCGGCTA CCGGGTCGAG CCTTACTTTA TCGACCATAT CGACAATGCC
TACGAGCAGA CGGTAGAAGA AGCCAGCCCT ACGCTAGCCT GTAAGCCTGA GTTAATTCAG
CCACAGACGC TGCCAACCGA CGATCCTTTT GCAGCGATGG CGCAGGAACT GCCTAAGCAC
GAAGTGGCAA ATCAAGAGGT AGAAGGCCTA GAAGTCGCGA GCCAAGAAGC TAACGCCGAA
GATCCTAGCT GTCCGAGCAC GGCTCGCCAC GCACCGCAGA TCATCAGCAA ACAGACGGCC
TTCCTGATCA CCGAAGCCCT GAAGAGCGTA ATCTGGGGCG GTGGCGATTG GAGCAAGGGC
ACAGGCTGGA ACGGCACCGC CTGGCGCGCC GCCCGTGTGG TAAATCGCCA CGATATCGCC
GGTAAGACAG GTACCACCAA CGAATCGAAA GATACTTGGT TCAGTGGCTT CACACCGACG
CTGGCAACTA CCGTATGGGT CGGCTTCGAC GATCACAGCA TCGAACTGGG CCGCACCGCC
TGGAATACCA ACGGCGCGAA AGATCAGATC TCGGGCGCCG AGGCCGGTGC AAAGACCGCC
GGCCCAGGCT GGAACGAGTT TATGAAAAAC GCCCTCCAAG GCACGCCTGA GCTACCTTCT
CCTCCACCGG AAGGGATCGT CTCGGCCCGT ATCGACCTGG CCACAGGCAA GTTAAGCCGT
AAGACAGACT ACACCACCAA GTTCGAGTAT TTCATTCAGG GTACCGAGCC GAAGGAATTT
GCCACCGAGG CGCAGACTCA GGAAGATATC TTTATCGACG ATTCAGTAGA AGATCTGTTC
CAATAG
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| Protein sequence | MKWFKRITIA LFSLALLGIG AIAAAYFYVL PDLPDVTTLK TVKLQTPLRI YSADGKLISQ
FGEKRRIPVE YEQVPQQLIN AVLDTEDARF FEHKGIDPIG IIRAAVILAT TGKKSQGAST
ITQQVARGFF LSREKTYIRK IKEIFLALKI EQALSKKEIL TLYLNRSFLG NRAYGVGAAA
QVYYGKELEE LTLPEMAMIA GLPQAPSAAN PIRNPARAMN RRNWVLSRML EKENITPDEY
QEAIRAPITA KYHGAEVELY APYISEMARD YLVEKLGEEE AYTGGYNVYT TVDSRLQMLA
QEALRNNVYA YDERHGYRGA TKVLWDAEGT AKLDETQIVT QLKQTQGFQG LEPAAVLEVA
EQSVKVINAK GETLTLEWEG LKWARKFISN KRQGKAPKTA GEILKAGEQV WIRNNGNIWQ
LSQIPEVASA IVSLDPKDGA IRTLVGGYSF HTSQYNRVTQ AKRQLGSNIK PFIYTGALEK
GYTLATLINN APINNADIRQ GTAWRPKNSP DKYTGPTRLR VGLAQSINVM SVRAMRYTGL
ESAIDTLVKF GFDRDDLPQN ESLALGSPSV TPLQVVTAFS VFANGGYRVE PYFIDHIDNA
YEQTVEEASP TLACKPELIQ PQTLPTDDPF AAMAQELPKH EVANQEVEGL EVASQEANAE
DPSCPSTARH APQIISKQTA FLITEALKSV IWGGGDWSKG TGWNGTAWRA ARVVNRHDIA
GKTGTTNESK DTWFSGFTPT LATTVWVGFD DHSIELGRTA WNTNGAKDQI SGAEAGAKTA
GPGWNEFMKN ALQGTPELPS PPPEGIVSAR IDLATGKLSR KTDYTTKFEY FIQGTEPKEF
ATEAQTQEDI FIDDSVEDLF Q
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