| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0206 |
|---|
| Symbol | |
|---|
| ID | 4923374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 219411 |
|---|
| End bp | 220772 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640161729 |
|---|
| Product | argininosuccinate lyase |
|---|
| Protein accession | YP_001092337 |
|---|
| Protein GI | 127511140 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0165] Argininosuccinate lyase |
|---|
| TIGRFAM ID | [TIGR00838] argininosuccinate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0353439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTAT GGGGCGGAAG ATTTAGCCAA GAGAGCAGCG CACTGTTTAA ACTTTTCAAC
GATTCCCTGC CGGTCGATTA TCGGCTGGTG GAAGAAGATA TTGTTGGTTC CATTGCCTGG
GCCGATGCCA TCACAGGTGT GGGCATTCTC AGCCAGCAAG AGTGTCAGTC GCTCAAGCAG
GCGTTGCAAG AACTGCTGGC CGAGGTGAAG GATCAGCCAG AGACCATCCT GGCCTCCGGC
GCCGAAGATA CCCACAGTTT TGTCGAGCAA GCCTTGATCG CCAAGGTCGG TGATCTGGGT
AAGAAGCTGC ATACAGGCCG TTCGCGTAAC GATCAGGTGG CGACCGATCT TAAGCTCTGG
TGTAAGAAGG AGGGCAAAGC TCTGCTTGAA CTGCTGGCAC AGTTAAAGGC AGCCTTGCTG
TCACTTGCTG AACGTGAGCT GGATGCTGTC ATGCCGGGTT ATACCCATCT GCAGCGGGCG
CAGCCTGTGG CCTTCGGTCA CTGGTGCCTA GCCTATGTGG AGATGTTTGA GCGTGATATC
AGCCGTCTGC AAGACTGTCT GCAGCGCCTC GATACCTGTC CGCTGGGCAC GGGCGCACTA
GCTGGTACCG CCTACCCCAT GGACAGATAC GCGCTGGCTA AGTCATTGGG ATTCGCCTCG
CCAACTCTTA ATAGCCTAGA TTCTGTGTCT GACAGGGATC ATGTGATCGA GTTATGCTCG
GACGCCGCCA TCAGCATGAT GCACCTGAGC CGCATGGCCG AAGATTTGAT CTTCTTCAAC
AGCGGTGAGG CGGGCTTTAT CGAATTGGAC GATCAGGTTA CCTCGGGTTC ATCGCTGATG
CCGCAGAAGA AAAACCCAGA TGCGCTTGAG CTTATCCGTG GTAAGACGGG CCGTGTCTAT
GGCAGCCTAA TGGGCATTCT GACCACCATG AAGGCCCTGC CTCTGGCTTA CAACAAGGAT
ATGCAGGAAG ACAAAGAGGG CCTGTTTGAC GTGATGGACA GCTGGTCTAT CTGTCTGGAG
ATGGCCGCTC TGGTGCTGTC TGGCTTAAAG GTCAACAGAG AGAATACCCT GTCGGCGGCC
CAGCAGGGTT ATGCCAATGC AACCGAGCTT GCTGACTATC TGGTAGCCAA AGGCATGCCG
TTTAGAGAGG CGCATCATGT GGTGGGTGAG GTCGTGGTTG AGGCGATCGC CCAGAAGAAG
CCTATCGAAG AGTTCGAGTT GGCTAGCCTG CAGGTGTTCG CCAGCGTCAT CCAGGAAGAT
GTTTATCAAT GTCTGACGAT AGACTCTTGT CTGGCTAAAC GTGAGGCTCT GGGTGGTACG
TCACTAACCC AAGTGAAGGC GGCGTTGGCT GCCAAGGGCT AG
|
|---|
| Protein sequence | MALWGGRFSQ ESSALFKLFN DSLPVDYRLV EEDIVGSIAW ADAITGVGIL SQQECQSLKQ
ALQELLAEVK DQPETILASG AEDTHSFVEQ ALIAKVGDLG KKLHTGRSRN DQVATDLKLW
CKKEGKALLE LLAQLKAALL SLAERELDAV MPGYTHLQRA QPVAFGHWCL AYVEMFERDI
SRLQDCLQRL DTCPLGTGAL AGTAYPMDRY ALAKSLGFAS PTLNSLDSVS DRDHVIELCS
DAAISMMHLS RMAEDLIFFN SGEAGFIELD DQVTSGSSLM PQKKNPDALE LIRGKTGRVY
GSLMGILTTM KALPLAYNKD MQEDKEGLFD VMDSWSICLE MAALVLSGLK VNRENTLSAA
QQGYANATEL ADYLVAKGMP FREAHHVVGE VVVEAIAQKK PIEEFELASL QVFASVIQED
VYQCLTIDSC LAKREALGGT SLTQVKAALA AKG
|
|---|
| |