| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0196 |
|---|
| Symbol | |
|---|
| ID | 4922518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 202290 |
|---|
| End bp | 202877 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640161715 |
|---|
| Product | redoxin domain-containing protein |
|---|
| Protein accession | YP_001092327 |
|---|
| Protein GI | 127511130 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0526] Thiol-disulfide isomerase and thioredoxins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000417571 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0470366 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAA AGTTAGCCAC GGCGCTGCTG TCGGCGGCTC TCGCCTTAGG CGGATATGCC
GCCAGCGTGC AAGCCTATCC CGGCATGCAG AAGAAGCAAG GCGGTGAGGT GCAGTCGAGT
GTCGATCTGA TCAACGTGCT GCCAAAAGCC TATCCGATAG ATCCTGTGCC CTTTAAGGAT
GCCCAGGGTA AGGCGATCGA CTTCAGTCAG TATCGCGGTC AGGTAGTGAT GGTCAACATG
TGGGCCACCT GGTGTCCCCC TTGTGTGCGT GAGCTGCCGG CCATAGATCG CTTCAAAGGC
AAGTTCGATC CTAAACAGTT TCGCGTGCTG CCGATATCGA TCGATATGAA TGGCAAGGAG
AAGGTCGAAC CCTTCCTCGC CTCTCTGGGG ATGGATAAGT TCGAGACTTA TTATGATCCA
CAGCAGCAGC TGGGTCAGGT GTTCCCCCTA GATACAATAC CGGCGACCTT TATTCTCAAT
CAGCAGGGCG AATTGATCGC CTTCGTCAGA ACGTTTGTCG ACTGGGATGA TGAGAAAGCG
GTGAAATTGA TCGAGAGCTT TATCGCGTCA GAGACTCAAA AACAGTAA
|
|---|
| Protein sequence | MKSKLATALL SAALALGGYA ASVQAYPGMQ KKQGGEVQSS VDLINVLPKA YPIDPVPFKD
AQGKAIDFSQ YRGQVVMVNM WATWCPPCVR ELPAIDRFKG KFDPKQFRVL PISIDMNGKE
KVEPFLASLG MDKFETYYDP QQQLGQVFPL DTIPATFILN QQGELIAFVR TFVDWDDEKA
VKLIESFIAS ETQKQ
|
|---|
| |