| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0194 |
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| Symbol | |
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| ID | 4922351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 201257 |
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| End bp | 201814 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640161713 |
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| Product | periplasmic protein thiol--disulphide oxidoreductase DsbE |
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| Protein accession | YP_001092325 |
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| Protein GI | 127511128 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0526] Thiol-disulfide isomerase and thioredoxins |
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| TIGRFAM ID | [TIGR00385] periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00145557 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0416851 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAAAA GGCTAGTATT ATTTATTCCT TTGATTCTGT TTTTGGTGAT GGGAGTGTTC
CTCTATAAGG GACTCTTCCT GAATCCACAG CAGCTGGACT CTGCACTAGA AGGAAAGCCG
ATACCGGCTT TCCAACTGCA AAAGCTTGAA GATGCCAACG AGATCATTAC CAATGACAGC
ATCAAGGGTC AGGTCTCACT GCTGAACGTA TGGGCCACCT GGTGTCCGTC ATGTAAGTAT
GAGCATCCTT ATTTGATGCG CTTGGCCAGA CAGAACATCT TGCCTATCTA TGGCATCAAC
TATCGTGACG AGCGTGCCAT GGCGATCCGT GAGCTGAGCC GCGAGGGCGA TCCTTACACC
AAGAATATCT TTGACCATGA CGGACGTTTA GGTCTGGATC TTGGGGTGTA CGGTGCGCCC
GAGAGCTATC TGGTGGATCA CAACGGTATC ATCCGCTTCC GTTACGCCGG TCCTATCGAT
ATGCGTGTCT GGAATGAGAC ACTCTATCCC ATGATTCAAG AGTTACAGGC ACAGGCTAAA
GCTGAGGGAG CATCTTAA
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| Protein sequence | MKKRLVLFIP LILFLVMGVF LYKGLFLNPQ QLDSALEGKP IPAFQLQKLE DANEIITNDS
IKGQVSLLNV WATWCPSCKY EHPYLMRLAR QNILPIYGIN YRDERAMAIR ELSREGDPYT
KNIFDHDGRL GLDLGVYGAP ESYLVDHNGI IRFRYAGPID MRVWNETLYP MIQELQAQAK
AEGAS
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