Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0192 |
Symbol | |
ID | 4922153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 197601 |
End bp | 198851 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640161711 |
Product | TPR repeat-containing protein |
Protein accession | YP_001092323 |
Protein GI | 127511126 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000308025 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00684666 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCACAC TCTGGATTTT TATTGCGCTT TTTGTATTAG TCAGCCTTGT GCTGATTTGG TTTCCACACT TCCGCCAGCA AAAGATGCTG CAGGCCGAAG AAGCCGGTGT GCGTAAGGCC ACCAACCTCG AACTTTTTAA CAATCGCCTA GCGACCCTAG AGAAGGAACT TGAGGATGAG CTGCTGGATC AAGATGAGTT TAACGCGCTA AAGAAAGAAC TCGAGATCAG CCTGCTTCAG GACATGAAGC AAGGTGAAGA TGAATCTCTG GTCGGTCAGA TCAAGCCTAA GAGCCTACTC TGGCCAACAT TGATGTCTGT GGTGGTATTA GGTGTTTCTG GCTACTTCTA TGCCAACCTA GGTGCGTATG CCAACCTAGA CAAGGCGGTT CCCGACAATC CACACGCAGG AATGGATGCC GCCCAGATCA TGACCCAGCG CATTCAGATG ATGGAATCAC AGCTGCAAGC CGAGCCGGAA AACAGCCAGC TGCTGTTTAG CCTTGGCCAT GCCTACATCA GCGCCAACCG TTATGATGAT GCGGTAAAAG CATTCGACAA GGCGATGGAG CTAGTGGGTA CCCACGCCGA GCTGCTTGGT CCTAAGGCGA CAGCCATGTA CTACAAGGCC AACCAAAGAA TCACCCCTGC GGTACAGGCC ATTATCGACC AATCATTGGC ATTAGATCCT GAAGATCCTT CAACCCTACT GCTTGTCGGT ATGGATGCCT TCTTCAGTGC TCAATATAAG AAGGCGATCG ATGCCTGGCA GATCATTCTC GATAGCGACA GAAGCGATGT GGACCGTAGC GCCATCATCA ATGCCATCGA GAGCGCCAAG ATGAGAATGC AAGCCGAAAC TGGCGAGATG CCTAACGACG CGACTCATCA GCAGGCCAAG GCCACTACCG GTAAGACGGT AACCATAGAT GTGTCAATCG CACCCGAGCT GCTAGAGAAT GTCAGCGGTA GCGATATGCT GTTTATCTTT GCCCGCAACA CCCAAGGCCC TAAGGTGCCG CTAGCGGCGA CTAAGGTATC GGCGAAATCT CTGCCTGTCT CTATCACCTT AGATGACAGC ACTGGCATGG GCGGCGATAT CAAGCTGAGC GACGCCAAAC AGGTTGAAGT GATCGCCGTG CTCTCTAAGC ATGGTTCGGT TAAGGCGCAG CCTGGCGATC TACAGGGCCG TCTGGAAACC ATGGACGTGG GGTCAACCGC TAAGCTAGTG ATTGATACTC TGGTTCAGTA A
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Protein sequence | MTTLWIFIAL FVLVSLVLIW FPHFRQQKML QAEEAGVRKA TNLELFNNRL ATLEKELEDE LLDQDEFNAL KKELEISLLQ DMKQGEDESL VGQIKPKSLL WPTLMSVVVL GVSGYFYANL GAYANLDKAV PDNPHAGMDA AQIMTQRIQM MESQLQAEPE NSQLLFSLGH AYISANRYDD AVKAFDKAME LVGTHAELLG PKATAMYYKA NQRITPAVQA IIDQSLALDP EDPSTLLLVG MDAFFSAQYK KAIDAWQIIL DSDRSDVDRS AIINAIESAK MRMQAETGEM PNDATHQQAK ATTGKTVTID VSIAPELLEN VSGSDMLFIF ARNTQGPKVP LAATKVSAKS LPVSITLDDS TGMGGDIKLS DAKQVEVIAV LSKHGSVKAQ PGDLQGRLET MDVGSTAKLV IDTLVQ
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