| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0189 |
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| Symbol | |
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| ID | 4922029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 195435 |
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| End bp | 196121 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161708 |
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| Product | heme exporter protein CcmB |
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| Protein accession | YP_001092320 |
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| Protein GI | 127511123 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
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| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000173434 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00165227 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAATAAAG GTATCAGTTT CACCCAAGCG TTTTTCACCC TGCTTAGACG CGATCTTAAG
ATAGCGATTC GTCATAAGGG TGACATCTTC AATCCCTTAC TGTTTTTTAT CCTGGTGGTC
ACCCTCTTCC CACTGGGCAT TGGTCCCGAG CCGCAGGTAC TGACTCGCGT TGCACCGGGG
ATCATCTGGG TAGCCGCCCT GCTGGCATCT ATGTTGTCAC TCGAGCGACT GTTTAAGGCG
GACTTCGTCG ATGGTAGCCT GGAACAGATG CTGCTTAGCC CACAGCCATT GTCACTCATG
GTATTGGCAA AAGTGCTGGC CCACTGGATA TTGACCGGCG TACCACTGAT ACTGGTTGCC
CCGCTACTGG CCGTGCTGCT GCATCTTGAA GCCAACAGCT ATGGCGCACT GATGGCCACC
CTGGCACTGG GCACGCCCGT ACTCAGCCTG TTGGGCGCCA TAGGTGTCGC GCTTACCGTC
GGCCTGCGTA AGGGCGGCGT GCTGCTGAGC CTGTTGATCC TACCGCTTTA CATACCTGTA
CTAATTTTTG CAACCAGCGC CATCGATGCC GCTGGTCTAA ATCTACCCTA CAGCGGCCAT
CTCGCTATCA TAGGCGCTAT GCTGGTCGGT TCGTTAATAT TGGCACCTTT TGCAATTGGT
GCCTCATTAA GAGTGAGTAC TAACTAA
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| Protein sequence | MNKGISFTQA FFTLLRRDLK IAIRHKGDIF NPLLFFILVV TLFPLGIGPE PQVLTRVAPG
IIWVAALLAS MLSLERLFKA DFVDGSLEQM LLSPQPLSLM VLAKVLAHWI LTGVPLILVA
PLLAVLLHLE ANSYGALMAT LALGTPVLSL LGAIGVALTV GLRKGGVLLS LLILPLYIPV
LIFATSAIDA AGLNLPYSGH LAIIGAMLVG SLILAPFAIG ASLRVSTN
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