| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0183 |
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| Symbol | |
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| ID | 4921035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 191415 |
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| End bp | 192404 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640161702 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_001092314 |
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| Protein GI | 127511117 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000069352 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00169193 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TTGATATCGA GCAGGTTAAC
CCAACACGTG CCAAGGTTAC ACTGGAGCCG CTTGAGCGTG GTTTTGGTCA TACTTTAGGT
AACGCGTTGC GTCGTATCCT ATTGTCGTCT ATGCCCGGCT GCGCGGTTAC CGAAGTCGAG
ATTGATGGTG TACTGCACGA ATACAGCAGC AAGGAAGGCG TACAAGAGGA TATCCTAGAG
ATCCTACTAA ACCTTAAAGG TTTAGCAGTG GTTATCGAGG GTAAAGACGA GGCTATGCTT
ACATTAAGCA AGTCAGGCGC AGGCCCTGTT ACCGCAGCAG ATATCACGCA CGATGGTGAT
GTTACTATTA TGAATCCTGA TCATGTTATC TGTCATCTGA CTGGTAACAA TGACATTAGC
ATGCGTATCC GTGTTGAGCG TGGTCGTGGT TATGTACCAG CTTCGGCTCG TGCACAAACT
GAAGACGACG ATCGCCCAAT TGGCCGTCTG CTAGTGGATT CATCTTTCTC ACCTGTCGCG
CGTATTGCTT ACAATGTTGA AGCAGCACGT GTTGAACAGC GTACTGACTT GGACAAACTC
GTTATCGATA TGACCACTAA CGGCACTATC GATCCTGAGG AAGCGATTCG TCGTTCTGCA
ACCATTCTGG CTGAACAGCT AGATGCGTTT GTTGAGCTTC GTGATGTCAC TGAGCCAGAA
CAGAAAGAAG AGAAACCAGA GTTCGACCCA ATTCTGTTGC GTCCTGTCGA CGATCTAGAG
CTAACTGTAC GTTCGGCTAA CTGTTTGAAA GCCGAAGCGA TTCATTACAT CGGAGATCTG
GTACAGCGTA CTGAGGTTGA GCTACTTAAA ACGCCTAACT TGGGTAAGAA GTCTCTTACC
GAAATTAAGG ATGTGTTGGC TTCTCGCGGA CTTTCATTAG GTATGCGTCT AGAAAACTGG
CCTCCAGCCA GTTTAGCAGA CGACCTATAA
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| Protein sequence | MQGSVTEFLK PRLVDIEQVN PTRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV VIEGKDEAML TLSKSGAGPV TAADITHDGD
VTIMNPDHVI CHLTGNNDIS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDSSFSPVA
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE
QKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPASLADDL
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