| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0178 |
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| Symbol | secY |
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| ID | 4920939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 188374 |
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| End bp | 189714 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640161697 |
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| Product | preprotein translocase subunit SecY |
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| Protein accession | YP_001092309 |
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| Protein GI | 127511112 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000408952 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00214614 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAAAC CAGGACTTGA TTTAAAAAGC GCGAAGGGCG GTTTATCAGA ATTGAAAGCC
CGCCTACTGT TCGTGATTGG TGCGATTATC GTCTTTAGAG CCGGTTCGTT CGTACCAATT
CCTGGTATTG ACGCAGCTGT ATTAGCAGAG CTGTTTAATC AGCAGAAGGG TACCATCTTA
GGCATGTTTA ACATGTTCTC TGGTGGCGCC CTTGAACGTG CTTCTATCTT TGCTCTTGGT
ATCATGCCGT ACATCTCGGC ATCGATCATC ATGCAGCTAT TGACTGTGGT ACATCCTGCA
CTAGCCGAAC TGAAGAAGGA AGGCGAGTCA GGACGTAAGA AGATCAGTCA GTATACTCGA
TATGGCACAC TGGTCTTGGG TACATTCCAA GCGATCGGTA TCGCAACGGG TCTGCCAAAC
TTGGTCCCTG GTTTAGTTGT AAACCTTGGA TTTGGTTTCT ACTTCGTTGC AGTAGTGAGT
TTGGTCACGG GAACCATGTT CCTGATGTGG CTGGGTGAGC AGATTACCGA ACGAGGCATA
GGCAACGGTA TCTCGATTCT TATTTTCGCA GGTATTGTAG CCGGTCTACC TTCTGCTATC
GGCCAAACGG CTGAGCAGGC GCGTCAAGGC GACTTGAACG TACTAGTATT ATTGTTGATT
GCAGTGATCG TATTTGCTGT GACCTATTTT GTTGTGTTTG TTGAGCGTGG ACAGCGTCGT
ATCGTTGTTA ACTATGCTAA GCGTCAGCAG GGCCGTAAGG TGTTTGCCGC GCAGAGCACT
CACTTACCGC TTAAGGTCAA CATGGCAGGT GTGATTCCAC CAATCTTTGC GTCAAGCATC
ATTTTGTTCC CAGGCACACT GGCTCAGTGG TTTGGTCAGA ATGAAGGCTT GTCTTGGTTA
AGTGATTTTT CACTTGCAGT ATCGCCAGGT CAGCCGCTTT ACTCATTGTT GTATGCAACA
GCGATTATCT TCTTCTGTTT CTTCTACACT GCGTTGGTAT TTAACCCACG TGAAACAGCA
GATAACCTGA AGAAGAGTGG TGCGTTTATT CCCGGGATCC GTCCTGGAGA ACAGACTTCG
CGATATATAG ATAAAGTAAT GACTCGCCTA ACACTGGCCG GTGCATTGTA TATTACCTTT
ATCTGTTTAA TTCCGGAGTT CATGTTAATC GCGTGGAAAG TACAGTTCTA TTTTGGCGGT
ACTTCACTAC TAATTATGGT AGTCGTGATC ATGGACTTCA TGGCTCAGGT TCAGACCCAT
ATGATGTCAC ATCAGTATGA GTCTGTGATG AAGAAAGCTA ACCTAGTGAA TAAAGCGAAC
TTAGATCGCT TTGGTCGCTA A
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| Protein sequence | MAKPGLDLKS AKGGLSELKA RLLFVIGAII VFRAGSFVPI PGIDAAVLAE LFNQQKGTIL
GMFNMFSGGA LERASIFALG IMPYISASII MQLLTVVHPA LAELKKEGES GRKKISQYTR
YGTLVLGTFQ AIGIATGLPN LVPGLVVNLG FGFYFVAVVS LVTGTMFLMW LGEQITERGI
GNGISILIFA GIVAGLPSAI GQTAEQARQG DLNVLVLLLI AVIVFAVTYF VVFVERGQRR
IVVNYAKRQQ GRKVFAAQST HLPLKVNMAG VIPPIFASSI ILFPGTLAQW FGQNEGLSWL
SDFSLAVSPG QPLYSLLYAT AIIFFCFFYT ALVFNPRETA DNLKKSGAFI PGIRPGEQTS
RYIDKVMTRL TLAGALYITF ICLIPEFMLI AWKVQFYFGG TSLLIMVVVI MDFMAQVQTH
MMSHQYESVM KKANLVNKAN LDRFGR
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