Gene Shew_0177 details

Gene Information

• Locus tag: Shew_0177
• Symbol: rplO
• ID: 4920937
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 187932
• End bp: 188366
• Gene Length: 435 bp
• Protein Length: 144 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640161696
• Product: 50S ribosomal protein L15
• Protein accession: YP_001092308
• Protein GI: 127511111
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0200] Ribosomal protein L15
• TIGRFAM ID: [TIGR01071] ribosomal protein L15, bacterial/organelle

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000150023
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 2
• Fosmid unclonability p-value: 0.000371203
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAATTGA ATACTCTATC ACCTGCTGCA GGTGCAAAAT CAGCAGCTAA GCGTGTAGGT 
CGCGGTATCG GTTCTGGCCT AGGTAAGACT GCTGGTCGCG GTCACAAAGG TCAGAAGTCA 
CGTTCTGGTG GCGGTGTTCG CGTCGGTTTC GAAGGTGGTC AAATGCCACT TAAGATCCGT 
TTGCCTAAGT TTGGTTTTAC TTCGCGTAAA GCGATGGTAA CTGCCGAAAT TCGTGTAAGC 
GAACTGGCTA AAGTTAACGG TGATGTTGTC GACTTGAATG CACTGAAAGA TGCGAATCTT 
GTTACTCGCA ACATACAGTT TGCTAAAGTC GTTCTTTCAG GTACCATTGA ACGCCCAGTG 
ACCGTTAAAG GTCTGAAGGT AACCAAAGGT GCACGTGCAG CGATCGAAGC TGCCGGCGGA 
AAGATCGAGG AATAA 

 

Protein sequence

MKLNTLSPAA GAKSAAKRVG RGIGSGLGKT AGRGHKGQKS RSGGGVRVGF EGGQMPLKIR 
LPKFGFTSRK AMVTAEIRVS ELAKVNGDVV DLNALKDANL VTRNIQFAKV VLSGTIERPV 
TVKGLKVTKG ARAAIEAAGG KIEE