| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0170 |
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| Symbol | rplE |
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| ID | 4920877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 185050 |
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| End bp | 185589 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640161689 |
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| Product | 50S ribosomal protein L5 |
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| Protein accession | YP_001092301 |
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| Protein GI | 127511104 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0094] Ribosomal protein L5 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000106117 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000364727 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCGAAAC TGCATGATAA ATATAAAGAG ACTGTTATCG CTGAGCTTTC TAAGAAGTTC
GGTTATACCA GTGTCATGCA AGTCCCTCGG ATTGAGAAAA TCACCCTTAA CATGGGTGTT
GGCGAAGCTG TAGCAGATAA GAAAGTTATG GAGCACGCGC TTCGTGACAT GACTGCTATT
GCTGGTCAAA AGCCAGTTGT AACTGTTGCT CGTAAATCAG TTGCTGGTTT TAAAATCCGT
GATGGCTACC CGATTGGCTG CAAGGTTACC CTGCGTGGTG AACGCATGTG GGAATTCCTT
GAGCGTTTAG TTGATATCGC AATCCCGCGT ATCCGCGACT TCCGTGGTCT GAGCGCTAAG
TCGTTCGACG GACGTGGTAA CTACGCAATG GGTGTACGTG AGCAAATCAT CTTCCCGGAA
ATCGATTACG ATAAAATCGA TAAGATCCGC GGTATGGATA TTGTTATCAC TACTACTGCG
AAGAATGACG AAGAAGGCCG TGCTTTACTC GACGCCTTTA ACTTCCCATT CAAGAAATAA
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| Protein sequence | MAKLHDKYKE TVIAELSKKF GYTSVMQVPR IEKITLNMGV GEAVADKKVM EHALRDMTAI
AGQKPVVTVA RKSVAGFKIR DGYPIGCKVT LRGERMWEFL ERLVDIAIPR IRDFRGLSAK
SFDGRGNYAM GVREQIIFPE IDYDKIDKIR GMDIVITTTA KNDEEGRALL DAFNFPFKK
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