| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0151 |
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| Symbol | rpoB |
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| ID | 4923303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 165984 |
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| End bp | 170015 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640161670 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001092282 |
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| Protein GI | 127511085 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000804298 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCACAA
GTGTTGGATA TCCCTTACCT TCTGTCAATC CAGTTGGACT CGTTTAAGAA GTTCACCGAT
CAAGATCCTA CAGGTGAGCG TGGTTTAGAA GCCGCTTTCC GTAGCGTTTT TCCCATCAAG
AGCTTTTCTG GTAATTCAGA GCTGCAATAT GTCAGCTATA AGCTAGGTGA GCCAGTTTTT
GATGTGAAAG AGTGTCAAAT TCGCGGTGTT ACATACTCTG CTCCACTACG CGTTAAACTG
CGTATGGTGC TGTATGATCG TGAAGCTGCG CCTGGCACAG TTAAAGACAT TAAAGAACAA
GAAGTCTACA TGGGGGATAT CCCTCTGATG ACTGAAAACG GTACCTTTGT TATCAATGGT
ACTGAGCGTG TTATCGTTTC TCAGCTGCAC CGTTCTCCTG GTGTATTCTT CGATCACGAC
CGTGGTAAGA CCCACTCTTC AGGTAAGGTG CTTTATAACG CACGTATTAT TCCTTACCGT
GGCTCATGGT TGGACTTCGA GTTCGATCCT AAAGATGCAC TGTTTGTACG TATTGACCGT
CGTCGTAAGC TTGCGGCGTC TATCATACTG CGTGCACTTG ACTACTCTAC TCAAGATATT
CTCGATCTGT TCTTCGAACG TGTTCAGTAC AAGATCAAGA AAGATAGCCT AGTCATGGCA
CTGGTTGCCG ATCGCCTACG TGGTGAGACA GCCAGCTACG ACATCAAAGA TGCTGAAGGT
AACATCATAG TTGAGAAGGG CCGCCGTATT ACTGCGCGCC ACATTCGTCA ACTTGAAAAG
ACAAACACCA CAGAGCTCGA AGTACCTGTT GAGTACATTT CAGGCAAGAT CGCTGCACAA
GACTACATCG ACCCAGATAC GGGCGAAGTA CTGGTTTCTG CTAACGCCGA AATCAGCCTG
GAAGATCTTG CTAAGCTGTC TATGGCCGGC ATCAAAGATA TCGACACCCT ATACGTCAAC
GAGCTTGACC ACGGTGCCTA TATCTCTGAC ACCCTACGTA TCGATTCAAC CACTAACCGC
CTAGAGGCGC TGGTTGAGAT CTATCGTATG ATGCGTCCTG GCGAGCCGCC AACCAAGGAT
GCTGCCGAAG CGCTATTCCA AAACCTCTTC TTCAGTGAAG AGCGTTACGA CCTGTCTAAA
GTGGGTCGTA TGAAGTTCAA CCGTCGTCTC GGTATCGATG ACGATGAAGG TACAGGTATC
CTGACCAAAG AAGATATCGT TGCAGTAATG CAGAAGATCA TCGAAATCCG TAACGGTAAC
GATGAAGTCG ACGATATCGA CCACCTGGGT AACCGTCGTA TCCGTAGTGT TGGTGAAATG
GCTGAGAACC AGTTCCGTGT TGGTCTCGTT CGTGTAGAAC GTGCCGTACG TGAGCGTCTG
TCTCTTGGCG ATCTTAACGA GCTGATGCCA CAAGATCTGA TCAACGCTAA GCCGATTTCT
GCGGCAGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCTC AATTCATGGA CCAGAACAAC
CCGCTGTCAG AAGTGACACA CAAGCGTCGT ATCTCTGCGC TTGGCCCAGG CGGTCTGACC
CGTGAGCGTG CAGGTTTCGA GGTTCGAGAC GTTCACCCAA CTCACTATGG TCGTCTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATC GGTCTGATCA ACTCGTTGGC AAGCTTCGCG
CGCACCAACT CTTACGGCTT CCTCGAAACA CCATACCGCA AAGTGGTTGA TGGTGTGATC
ACAGATCAGG TGGATTACCT GTCTGCTATC GAAGAAGGTC GTTACGTGAT CGCACAGGCT
AACATCGAAG TCGATGCCGA TGGCCGTATG GTTGAAGAGC AGATCGCTTG TCGTCATAAG
GGTGAATCTA CCTTTATGCG TGCAGCAGAC GTTCAGTACA TGGACGTATC ACCACAGCAG
ATCATCTCTG TGGCAGCCTC TCTGATCCCG TTCCTAGAAC ACGATGACGC GAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAGGCA GTACCAACAC TTAGAGCTGA CAAGCCGCTA
GTAGGTACTG GTATTGAGCG TACATTGGCC GTTGACTCAG GCGTAGTTGT TGCCGCTAAG
CGTGGTGGTT ACGTTGACTA TGTCGATGCG AGCCGCATCG TGGTTAAGGT TAACGAAGAC
GAGCTGACTC CTGGTGAAGC CGGTATCGAC ATCTACAACC TGACCAAGTA CACACGTTCT
AACCAGAACA CCTGTATCAA CCAGCGTCCA TGTTGTAGCG TTGGCGAGCC AGTGGTTCGT
GGTGACGTAC TTGCAGATGG TCCATCTACC GACCTGGGTG ATCTTGCGCT TGGTCAGAAC
ATGCGTATCG CATTCATGCC TTGGAACGGT TACAACTTCG AGGATTCGAT CTTAATCTCT
GAGCGCGTTG CGCAAGAGGA TCGTTTCACC ACTATCCACA TTCAAGAGCT TTCTTGTATC
GCTCGTGATA CTAAGCTGGG TAGCGAAGAG ATCACCGCCG ATATTCCTAA CGTGGGTGAG
TCTGCGCTGT CTAAGCTGGA TGAATCAGGT ATCGTTTACA TCGGTGCAGA AGTGAAGGGT
GGCGACATCC TGGTTGGTAA GGTTACGCCT AAGGGCGAGA CTCAGCTGAC CCCTGAAGAG
AAGCTGCTAC GCGCTATCTT CGGTGAGAAG GCTTCTGACG TTAAAGACAG CTCACTGCGT
GTCCCTAACT CTGTTAAGGG TACCATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT
GAAAAAGACA AGCGTGCTGT AGAAATCGAA GAGATGCACA TCGCTCAGGC TAAGAAAGAC
CTGACCGAAG AGTTCAAGAT CCTTGAAGAA GGTGTCTTCG GCCGTGCGCG TAACCTTCTC
ATTGGAGCAG GTTTTGCCGA AGCCGAGCTT GATGCTCTGC CACGTCCTCA ACTACTGGTA
CAAACCATTG AAGACGAAAC TAAGCAGACT GAACTCGAGC AACTTGCCGA GCAGCATGAA
GAGCTGAAAG CCGATTTCGA TAAGAAATTT GAAATCAAAC GCCGCAAGAT CACCCAAGGT
GATGACTTGG CACCTGGCGT ACTGAAGATC GTTAAGGTTT ACCTGGCGGT TAAACGTACT
ATCCAGCCTG GTGACAAGAT GGCGGGTCGT CACGGTAACA AGGGTGTGAT CTCTAAGATC
AACCCAATCG AAGATATGCC GTATGACGAA AACGGTAACC CAGTGGACAT CGTACTGAAC
CCACTAGGTG TACCATCACG TATGAACATA GGTCAGGTTC TCGAAGTGCA CTTAGGTGCC
GCGGCCAAGG GCATTGGTGA TCGCATCACC GCTATGCTCG AAGAGCAGCG TGAACTTGCA
GAGCTTCGTG GCTACATCAA GAAGGTGTAC GAACTGGGTG AAGACGTGCA GCAGCAGGTC
GACATCGACT CGTTCACCGA TGAAGAAGTT CTACGTCTTG CTAAGAACCT CAAAGGCGGT
ATTCCGACTG CGACTCCAGC ATTCGACGGC GCGAAAGAGA AAGAGATTAA GGACATGCTT
GAACTAGCAG GTCTGCCAAC CTCTGGACAG CTGAAGTTGT TTGATGGTCG TACCGGTAAC
GAGTTTGAAC GTCCGGTAAC CGTAGGTTAC ATGTACATGC TTAAACTTAA CCACTTGGTT
GACGATAAGA TGCACGCGCG TTCAACAGGT TCTTACAGTC TTGTTACTCA GCAGCCTCTG
GGCGGTAAAG CTCAGTTTGG TGGTCAGCGT TTCGGTGAGA TGGAAGTATG GGCACTTGAA
GCATACGGTG CCGCTTACAC GCTACAAGAA ATGCTTACTG TTAAGTCTGA TGACGTTAAC
GGTCGTACTC AGATGTATAA GAACATCGTC GACGGTAACC ATCAGATGCA ACCAGGCATG
CCTGAGTCCT TCAACGTATT GCTGAAGGAG ATCCGTTCGC TCGGTATTAA CATCGAGTTG
GATCAAGAGT AA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA PGTVKDIKEQ
EVYMGDIPLM TENGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLAASIIL RALDYSTQDI LDLFFERVQY KIKKDSLVMA
LVADRLRGET ASYDIKDAEG NIIVEKGRRI TARHIRQLEK TNTTELEVPV EYISGKIAAQ
DYIDPDTGEV LVSANAEISL EDLAKLSMAG IKDIDTLYVN ELDHGAYISD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL GIDDDEGTGI
LTKEDIVAVM QKIIEIRNGN DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVVDGVI
TDQVDYLSAI EEGRYVIAQA NIEVDADGRM VEEQIACRHK GESTFMRAAD VQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRADKPL VGTGIERTLA VDSGVVVAAK
RGGYVDYVDA SRIVVKVNED ELTPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGEPVVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHIAQAKKD
LTEEFKILEE GVFGRARNLL IGAGFAEAEL DALPRPQLLV QTIEDETKQT ELEQLAEQHE
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
NPIEDMPYDE NGNPVDIVLN PLGVPSRMNI GQVLEVHLGA AAKGIGDRIT AMLEEQRELA
ELRGYIKKVY ELGEDVQQQV DIDSFTDEEV LRLAKNLKGG IPTATPAFDG AKEKEIKDML
ELAGLPTSGQ LKLFDGRTGN EFERPVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL
GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM
PESFNVLLKE IRSLGINIEL DQE
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