| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0147 |
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| Symbol | rplK |
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| ID | 4922205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 163424 |
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| End bp | 163852 |
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| Gene Length | 429 bp |
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| Protein Length | 142 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640161666 |
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| Product | 50S ribosomal protein L11 |
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| Protein accession | YP_001092278 |
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| Protein GI | 127511081 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0080] Ribosomal protein L11 |
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| TIGRFAM ID | [TIGR01632] 50S ribosomal protein L11 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000977469 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.034689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAAAGA AAGTTGATGG TTACATCAAA CTACAAGTAG CAGCCGGTGC TGCAAACCCG
TCGCCACCAG TTGGTCCTGC ATTGGGTCAA AAAGGTGTCA ACATCATGGA ATTCTGTAAA
GCATTCAACG CTCGTACTGA AAAGTTCGAG AAAGGTATGC CAATTCCTGT TGTGATCACT
GTTTACACTG ATCGCTCTTT CACTTTTGAA ACTAAGACGC CACCTGCTTC ATTCCTGCTG
CTTAAAGCTG CTGGTCTTAA GTCTGGTTCA GGCCGTCCTA ACACTGAAAA AGTGGGAACT
ATCAAGCGTA GCGCTGTCCA GGAAATCGCT GAGACTAAAG CTGCTGATAT GACTGGTGCT
GACATTGAAG CGATGACTCG CTCAATCGAA GGTACTGCGC GTTCAATGGG TTTGGTAGTA
GAGGATTAA
|
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| Protein sequence | MAKKVDGYIK LQVAAGAANP SPPVGPALGQ KGVNIMEFCK AFNARTEKFE KGMPIPVVIT
VYTDRSFTFE TKTPPASFLL LKAAGLKSGS GRPNTEKVGT IKRSAVQEIA ETKAADMTGA
DIEAMTRSIE GTARSMGLVV ED
|
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