| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0140 |
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| Symbol | |
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| ID | 4923780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 149997 |
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| End bp | 150455 |
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| Gene Length | 459 bp |
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| Protein Length | 152 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640161651 |
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| Product | RNP-1-like RNA-binding protein |
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| Protein accession | YP_001092271 |
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| Protein GI | 127511074 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0724] RNA-binding proteins (RRM domain) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000056681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0664394 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAGC CATTTCTTAT TGTTTTGATT GTCGCCATCC TGGGCGCATT GGCAATATCT
CAGTTCACAC CAGAGCTTTA TTCAGCGGTC GCATTTTTTA CTGGTGCTAT TATTGCGAGT
GTTATTTTTA CACTTCAGTC ATCTCCCGCT AACGCTACCG GAGGCGACAC TTATACAGGA
CCCACAATGA CACTCTATGT AGGCAACCTG CCTTACCGTG TGCACGAAGG TGAAGTGAAA
GAGTTATTTG GCAAGTATGG TCCTGTCAGC TCGGTCAGAT TGGTTCGCGA TCGCAAGACA
GGACGTCGTA AGGGTTTCGG CTTTATCGAG ATGTCAGAGG CGGGCGCCAA GAAGGCGATG
ACCAAACTAA ACGAATTCGA GTTCCAGGAA CGCACCCTCA AGGTTCGTGA AGCTAAGTCG
CAAGACGCAG AGAAAAACGA AGGAGCACAG GCCAGCTAA
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| Protein sequence | MQKPFLIVLI VAILGALAIS QFTPELYSAV AFFTGAIIAS VIFTLQSSPA NATGGDTYTG
PTMTLYVGNL PYRVHEGEVK ELFGKYGPVS SVRLVRDRKT GRRKGFGFIE MSEAGAKKAM
TKLNEFEFQE RTLKVREAKS QDAEKNEGAQ AS
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