| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0138 |
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| Symbol | |
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| ID | 4920446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 147823 |
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| End bp | 148920 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640161649 |
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| Product | tRNA (uracil-5-)-methyltransferase |
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| Protein accession | YP_001092269 |
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| Protein GI | 127511072 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02143] tRNA (uracil-5-)-methyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0022403 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0763736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATGTAG ACGCAATGGA TCCCCAGCAA TATGACGCAC AACTCGATGT GAAACGTCAG
AAACTAGCCC AGCTATTTGT CGACTTCGAG ACACCCGAAC TGGAAGTGTT TGCCTCACAG
AAGGCCCACT ACCGCATGCG CGCCGAGTTC CGCGTCTGGC ATGAGGGTGA AGATCTCTAC
TATTACATGT TCGATAAGGC GCAGAACCAG AAGATACGCT GCGAGCAGTT CTTACCGGCA
AGTCAGTTGA TCAACGACAT GATGCCAGAG CTGATGGCGG CGCTGCGTCC TAACCCGGTC
CTGAGACACA AGCTGTTCCA GGTTGATTTT CTCTCTACTC TCAGCGGAGA GATCTTAGTG
TCACTCCTGT ACCACAAGCA GCTCGATGCT CAGTGGCAAG AGGAGGCTCA GGCGCTGAAA
GAGGCACTGT CGAGCAAATT TAAGGTGGAC ATCATAGGCC GCGCTCGTAA GCAGAAGCTG
GTGATGGATC GCGACTTCGT TATCGAATCC CTACCCGTCA ACGGCAAACA GCTTACCTAC
AAGCAGGTCG AAAACAGCTT TACCCAGCCA AACGGCGAGG TGGCGATCAA GATGCTCGAG
TGGGCCATCG ACATCACCCG TGATAGCAGT GGTGACCTGT TGGAGCTCTA CTGCGGTAAC
GGTAATTTCT CTATCGCCCT GGCACAGAAC TTCAACCGCG TGCTCGCTAC CGAACTGGCC
AAGCCATCTG TGGACTCGGC CCAGTACAAC ATAGAGGCCA ACCAGATAGA TAATCTGCAG
ATCATCCGTA TGTCGGCGGA AGACTTTACC GATGCGCTGG CCAAGAAGCG CAGCTTCAGA
CGCTTAGAAG GGGTGGATCT GGACAGCTAT GACTGCAACA CCATCTTCGT CGACCCGCCA
AGAGCAGGCT TAGATGATAA TACCCTGTCT ATGGTGCAGG GCTACGAGCG TATTCTCTAT
ATCTCTTGTA ATCCCAATAC CCTGCTGGAC AACCTCAAGG TGTTGGACAA AACCCATAAG
ATCACCCGCT TCGCGCTGTT TGACCAGTTC CCTTATACAG ATCATATGGA ATCTGGCGTC
CTGCTGGAAC GTCGTTAA
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| Protein sequence | MNVDAMDPQQ YDAQLDVKRQ KLAQLFVDFE TPELEVFASQ KAHYRMRAEF RVWHEGEDLY
YYMFDKAQNQ KIRCEQFLPA SQLINDMMPE LMAALRPNPV LRHKLFQVDF LSTLSGEILV
SLLYHKQLDA QWQEEAQALK EALSSKFKVD IIGRARKQKL VMDRDFVIES LPVNGKQLTY
KQVENSFTQP NGEVAIKMLE WAIDITRDSS GDLLELYCGN GNFSIALAQN FNRVLATELA
KPSVDSAQYN IEANQIDNLQ IIRMSAEDFT DALAKKRSFR RLEGVDLDSY DCNTIFVDPP
RAGLDDNTLS MVQGYERILY ISCNPNTLLD NLKVLDKTHK ITRFALFDQF PYTDHMESGV
LLERR
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