| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0137 |
|---|
| Symbol | |
|---|
| ID | 4923966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 147125 |
|---|
| End bp | 147742 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640161648 |
|---|
| Product | DNA-binding transcriptional repressor FabR |
|---|
| Protein accession | YP_001092268 |
|---|
| Protein GI | 127511071 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00297198 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.372296 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGTA TCAGAGCACA GCAAAAAGAA AAAACGCGTC GCGCCTTGGT CGATGCGGCA
TTTAATCAAT TAAGTGCCGA ACGCAGTTTT TCTAGCCTGA GTCTGCGGGA AGTGGCTCGC
GAGGCCAACA TAGCGCCAAC CTCCTTCTAT CGTCACTTTA AGGATATGAA CGAGCTGGGG
CTCACCATGG TGGATGAAGG CGGCCTGACC CTGAGACAGA TGATGCGCAA GGGACGTCAA
CGCGCCGAGG CCGGCGGCAG CGTGATTCGC ATCTCAGTCG ATACCTTTAT GGAAGTCTTG
GAGTCTAACC CCAACGTCTT TCGCATCTTG CTGCATGAGC GCTCGGGCAC CTCGGCGCCG
TTTCGTGCGG CGGTGGCGAG AGAGATAGAA CACTTCATCT CGGAGTTAGC GCACTACACC
GAGGCGACCA CCAAGCGCAC CCCCGAACTG GCAAGAGCCC AGGCGGAGGC CCTAGTGACC
TTAGTCTTCA ATGCCGGCGC CGCGGCGCTG GATATGAAGC GGGTCGATCG CAAGATATTG
GCGGATCGCC TGGTGATCCA GCTGCGCATG GTGGCTAAGG GCGCCGAGTC CCTGCAGCAG
AAGATGGAAC ATCGTTAA
|
|---|
| Protein sequence | MMGIRAQQKE KTRRALVDAA FNQLSAERSF SSLSLREVAR EANIAPTSFY RHFKDMNELG
LTMVDEGGLT LRQMMRKGRQ RAEAGGSVIR ISVDTFMEVL ESNPNVFRIL LHERSGTSAP
FRAAVAREIE HFISELAHYT EATTKRTPEL ARAQAEALVT LVFNAGAAAL DMKRVDRKIL
ADRLVIQLRM VAKGAESLQQ KMEHR
|
|---|
| |