| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0128 |
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| Symbol | |
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| ID | 4923587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 138259 |
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| End bp | 138933 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161639 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001092259 |
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| Protein GI | 127511062 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCCCT GGAATAAGAT AGATACCGTG CTGCTGGATA TGGACGGCAC CCTGTTGGAT
CTGCATTTCG ACAACCATTT CTGGCTTAGC CTGGTGCCTC AGGCCTTGTG TGAACAAAGG
CAGATCCCAA AGGCCGACGC CCAACAACTG GTGGAGAGTG CCTACGCCAA GGTCTTCGGC
ACCCTGGAGT GGTATTGCCT TGAATATTGG CAACAGGAGC TGGGTTTAGA CATCCTGGCT
TTGCACCACA CTCTAGTGGA CCGGATCCAG CTACGTCAGG ACAGCATGCC CTTTCTCACC
GCACTGGCCA GACACAGCAA GCGGCGCATC TTGGTCACCA ACGCCCATCC CCACAGCCTG
GCGCTGAAAC TCGAGCATAC AGATCTGGCT AACGGGCTCG ATGAGATGCT CTCGAGTCAC
GCCACCGGCT ATCCCAAGGA ACACCCGCAA TTTTGGCGTC ACCTGTTTAA TCAGTATTCC
TTGGATCCCA GCCGCTGCCT GTTTATCGAC GACAGCGAGC CCATACTACA GGCAGCCAAG
AAGGCTGGCG TCGGCTACCA GTTGGGGATC AAGAATCCCG ACAGCCAGCA GCCTCACAAG
CAGTTTGCCG ACTTTCCGGC CATCGACGAT TACCATCATC TGCTGCTCTC CCTTGAACAG
GCCAGACTCG GCTAA
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| Protein sequence | MFPWNKIDTV LLDMDGTLLD LHFDNHFWLS LVPQALCEQR QIPKADAQQL VESAYAKVFG
TLEWYCLEYW QQELGLDILA LHHTLVDRIQ LRQDSMPFLT ALARHSKRRI LVTNAHPHSL
ALKLEHTDLA NGLDEMLSSH ATGYPKEHPQ FWRHLFNQYS LDPSRCLFID DSEPILQAAK
KAGVGYQLGI KNPDSQQPHK QFADFPAIDD YHHLLLSLEQ ARLG
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