| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0117 |
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| Symbol | |
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| ID | 4923484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 128380 |
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| End bp | 129282 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640161628 |
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| Product | protoheme IX farnesyltransferase |
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| Protein accession | YP_001092248 |
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| Protein GI | 127511051 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
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| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAC CTATGACAAT CACTAAGCCT GTCGCCACCC CGCTCCCTTG GCGCGCCTAC
CTCGAAATGA CCAAGCCTAG GGTGGTTGCC CTGATGCTGC TGACCGTATT GGTCGGCATG
TGTCTGGCGG TGCCAGGCGC GGTACCGGTT CAGCCGCTGA TCGCCGGCCT GGTGGGCATA
GGCATGATGG CGGGGGCCGC TGCGGCCTAT AACCATCTGA TCGACCGCCG CATCGACGGC
CTGATGGCCC GCACCTATAA CCGTCCGCTC CCCAAAGGCC GGATCTCTAT CACCAAGGCG
CTCACCTTTG CCACCGCCAT GGCGATTCTC GGCTTTGCGC TGCTCTACTG GGCCGTCAAC
CCGCTCACCG CCTGGCTCAC CTTCGCCAGT CTCATCGGCT ACGCGGTGAT CTATACCGCC
TATCTCAAGC GCGCGACACC CCAGAATATC GTCGTCGGCG GCTTGGCCGG CGCCATGCCC
CCCCTACTGG GTTGGACGGC GATCACCGGT GAGTTTCACG GCCATGCCTT GCTGCTGGTG
ATCATCATCT TCGCCTGGAC CCCGCCCCAC TTCTGGGCGC TGGCGATCCA CAGACGCGCC
GAATATGCCA AGGTCGATGT GCCCATGCTG CCCGTCACCC ACGGCGTCGA ATTTACCAAG
ACCTGCATCA TGCTCTATAC GGTGTTGCTG GCGCTGGCCT GCCTCTACCC TGTGCTGGTC
GGCATGTGCG GTCCCCTTTA TCTGGTGGGG TCGACTCTGT TGAGTTGCGG CTTCATCTAT
AAGGCCTGGC AACTCAAGTA TCGAGACAAG CCGGGCCTGG CGATGCAGGT GTTTCGCTTC
TCCATCTACC ATCTGATGCT GCTCTTCTTG CTGCTCCTAG TCGACCACTA TCTCTGGAGC
TAA
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| Protein sequence | MAKPMTITKP VATPLPWRAY LEMTKPRVVA LMLLTVLVGM CLAVPGAVPV QPLIAGLVGI
GMMAGAAAAY NHLIDRRIDG LMARTYNRPL PKGRISITKA LTFATAMAIL GFALLYWAVN
PLTAWLTFAS LIGYAVIYTA YLKRATPQNI VVGGLAGAMP PLLGWTAITG EFHGHALLLV
IIIFAWTPPH FWALAIHRRA EYAKVDVPML PVTHGVEFTK TCIMLYTVLL ALACLYPVLV
GMCGPLYLVG STLLSCGFIY KAWQLKYRDK PGLAMQVFRF SIYHLMLLFL LLLVDHYLWS
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