Gene Shew_0116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0116 
Symbol 
ID4923528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp127740 
End bp128375 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content58% 
IMG OID640161627 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_001092247 
Protein GI127511050 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCGC TATGGATAGT CCTAACCTTA TTCATCTTCA GCGGCCTGGG GGCGATCGCG 
GCGGTTAACT TCACGGGCCA AGCCACGCCG CCCGAGCTGC TCACCAGCTA TCGCTATCCC
CAGCAGCGAC CTCTGTCCCC CTTCGAGCTG ACGGATCAGA ACGGCAAGGC CTTCACCAAC
GCCCGGCTAA AAGACAAGTG GAGCCTGTTC TTCGTCGGCT ACACCTCTTG CCCGGATGTC
TGCCCCACCA CCCTGGGCAA GCTGGCGGCG GCCTATCAAC AACTGGAAGG CGTGGTGGAT
CTGCAGGTGG TGTTTCTGTC GGTCGATCCT GCGCGGGATA CCCAGGTAAA ACTCAAGGAT
TACATCAACT TCTTCAATCC CAACTTCATT GCGGTCACGG CGCCCCACAG CCAGTTACTG
CCGCTGACCC GTGAGCTGGG ATTCGTATAT ACCATGGTGG GCGAAGGCGA AAACTATCAG
GTGGATCACA GCGCCTCCAT GGTGCTCATC TCTCCCGACG GCACCCGGGT GGCCACGGTT
AAACCCACCA GCCTAGATCC GCGACAGCTG CCGCAGATCC GCAACAAGAA CCTCATTCAT
GATGTGATCG CCCTGGCGAC TCACTATGGT GAATAG
 
Protein sequence
MKPLWIVLTL FIFSGLGAIA AVNFTGQATP PELLTSYRYP QQRPLSPFEL TDQNGKAFTN 
ARLKDKWSLF FVGYTSCPDV CPTTLGKLAA AYQQLEGVVD LQVVFLSVDP ARDTQVKLKD
YINFFNPNFI AVTAPHSQLL PLTRELGFVY TMVGEGENYQ VDHSASMVLI SPDGTRVATV
KPTSLDPRQL PQIRNKNLIH DVIALATHYG E