Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0116 |
Symbol | |
ID | 4923528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 127740 |
End bp | 128375 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640161627 |
Product | electron transport protein SCO1/SenC |
Protein accession | YP_001092247 |
Protein GI | 127511050 |
COG category | [R] General function prediction only |
COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGC TATGGATAGT CCTAACCTTA TTCATCTTCA GCGGCCTGGG GGCGATCGCG GCGGTTAACT TCACGGGCCA AGCCACGCCG CCCGAGCTGC TCACCAGCTA TCGCTATCCC CAGCAGCGAC CTCTGTCCCC CTTCGAGCTG ACGGATCAGA ACGGCAAGGC CTTCACCAAC GCCCGGCTAA AAGACAAGTG GAGCCTGTTC TTCGTCGGCT ACACCTCTTG CCCGGATGTC TGCCCCACCA CCCTGGGCAA GCTGGCGGCG GCCTATCAAC AACTGGAAGG CGTGGTGGAT CTGCAGGTGG TGTTTCTGTC GGTCGATCCT GCGCGGGATA CCCAGGTAAA ACTCAAGGAT TACATCAACT TCTTCAATCC CAACTTCATT GCGGTCACGG CGCCCCACAG CCAGTTACTG CCGCTGACCC GTGAGCTGGG ATTCGTATAT ACCATGGTGG GCGAAGGCGA AAACTATCAG GTGGATCACA GCGCCTCCAT GGTGCTCATC TCTCCCGACG GCACCCGGGT GGCCACGGTT AAACCCACCA GCCTAGATCC GCGACAGCTG CCGCAGATCC GCAACAAGAA CCTCATTCAT GATGTGATCG CCCTGGCGAC TCACTATGGT GAATAG
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Protein sequence | MKPLWIVLTL FIFSGLGAIA AVNFTGQATP PELLTSYRYP QQRPLSPFEL TDQNGKAFTN ARLKDKWSLF FVGYTSCPDV CPTTLGKLAA AYQQLEGVVD LQVVFLSVDP ARDTQVKLKD YINFFNPNFI AVTAPHSQLL PLTRELGFVY TMVGEGENYQ VDHSASMVLI SPDGTRVATV KPTSLDPRQL PQIRNKNLIH DVIALATHYG E
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