| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0107 |
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| Symbol | |
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| ID | 4920449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 117145 |
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| End bp | 118491 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161618 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001092238 |
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| Protein GI | 127511041 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCCAC TAAACTTATT GTTAAATAAA CAGAAAAACA GCCAGTTGTT CGCGCTCGCC
GTGCCTATGA TCCTGTCTAA CATTACGGTT CCCCTGCTGG GGCTGGTCGA TACTGCCGTC
GTGGGACATC TGAGTAACGC CTATTATTTA GGGGGAGTCG CCGTCGGGTC AACGGTGATC
ACCCTGATTT TATGGATTCT GGGCTTCCTG CGCATGTCGA CTACGGGGCT TGTGGCACAG
GCCTTCGGCG CCAAGGAGCT TCACACCCAA TACCGTTTAT TGATGCAGTC GGCCAGCCTG
GCGCTGCTGC TTTCCCTGCT GGTGCTACTC CTGCAGCAAC CCATAATCAC CGCGGCGATG
GCACTCTCCG ACGCCAGCGA GCAGGTGCAG TATTACAGCC AGGCCTATTT TAACATCCGC
ATCTGGTCGA CCCCCTTCGC CCTGGTCAAC CTGGCCCTGC TGGGTTGGCT GCTGGGGCGC
CAGCAGCCTA AGGCCGCCAT GTGGCAGCTC ATCGCCGCCA ACCTCACTAA CATACTTTTG
GATCTGCTAT TCGTAATCGG ACTTGGCTGG GGCGTCGAAG GAGCCGCTCT GGCCTCTGTA
CTGGCGGACA TGACGGGCTT TGCCGTTGCC GCCAGCATGG TGGTTCGCAC CATCAAGCGA
GAGGGAGGTT TCGAGTTCCT GCCTCTACTT CGCAGCCTGT CGCTCAATAG CTATCAGCGC
CTGGTGCGCC TCAATCTGGA TATCTTTATC CGCAGCCTCT GCCTGCAACT CGCCTTCGCC
TTCATGACCT TTCAGGGAGC TAACCTGGGC GACAATACGG TGGCCGCCAA CGCCGTGCTG
CTCAACCTTT TGCTGCTCAT CTCTTACGCC TTGGATGGCA TCGCCTATTA TGGTGAGGCC
GAGGTGGGCC GAGCCGTGGG CGAAAAGAGC CACCAGCGCA TGACCCAGAG CGTCACTCTG
GCCGGGCTCT GGTCGGCCAT CTTTGCCCTG TTGTTTACCC TGTTTTTTGC CCTTTGGGGC
GAGCAGATCA TCAAGCTGCT GACCAATATC TCTGAGGTGC GCCAGGAGGC CCTGGCCTAC
TTGGGCTGGG TGGTCGCCCT GCCGCTACTC GCCTTCGGCT CCTACCTGTT CGACGGCGTC
TATATCGGCG CCGCCCAAGG CAAGGCGATG CGCAACACCA TGATACTCGC CACCTTCGGG
GTCTTCTTCC CCACATGGCT ACTGTTGCAG GATTATGGTA ACCATGCCCT GTGGGCCGCC
ATGAGCCTGT TTATGGTGAC CCGCAGCCTC AGCCTGGCAC TGGACTACCG CTATCGATTG
AGTAAGACCC TAACGAAAAC GGGATGA
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| Protein sequence | MSPLNLLLNK QKNSQLFALA VPMILSNITV PLLGLVDTAV VGHLSNAYYL GGVAVGSTVI
TLILWILGFL RMSTTGLVAQ AFGAKELHTQ YRLLMQSASL ALLLSLLVLL LQQPIITAAM
ALSDASEQVQ YYSQAYFNIR IWSTPFALVN LALLGWLLGR QQPKAAMWQL IAANLTNILL
DLLFVIGLGW GVEGAALASV LADMTGFAVA ASMVVRTIKR EGGFEFLPLL RSLSLNSYQR
LVRLNLDIFI RSLCLQLAFA FMTFQGANLG DNTVAANAVL LNLLLLISYA LDGIAYYGEA
EVGRAVGEKS HQRMTQSVTL AGLWSAIFAL LFTLFFALWG EQIIKLLTNI SEVRQEALAY
LGWVVALPLL AFGSYLFDGV YIGAAQGKAM RNTMILATFG VFFPTWLLLQ DYGNHALWAA
MSLFMVTRSL SLALDYRYRL SKTLTKTG
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