| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0106 |
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| Symbol | |
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| ID | 4920517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 116533 |
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| End bp | 117111 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640161617 |
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| Product | putative DNA uptake protein |
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| Protein accession | YP_001092237 |
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| Protein GI | 127511040 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[S] Function unknown |
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| COG ID | [COG0316] Uncharacterized conserved protein
[COG0694] Thioredoxin-like proteins and domains |
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| TIGRFAM ID | [TIGR00049] Iron-sulfur cluster assembly accessory protein
[TIGR03341] IscR-regulated protein YhgI |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.790621 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCACCA TTTCCGATGC AGCTCAGGCG CATTTTGTTA AGCTACTCGC TGACCAGCCT
GAAGGAACTC ATATTCGCGT TTTTGTTATC AGCCCAGGTA CCCCTTCGGC TGAGTGTGGC
GTGTCTTACT GTCCGCCGGA TGCCGTAGAG GCAGACGACA TCGAACTCGA ATTTAATGGT
TTCCATGCCA TGGTAGATGA GAAGAGTGCT CCTTTCCTCG AAGATGCTTC TATTGATTTC
GTCACCGACC AGCTGGGTTC TCAACTGACC CTGAAGGCGC CCAATGCCAA GATGCGTAAG
GTCGATGCCG ACGCGCCGCT GAAAGAGCGT ATCGAGTATG TGATCCAGTC TGAGATCAAC
CCACAACTGG CTAGCCATGG CGGTAACATC ATGCTGGTGG ATATCGACGA AGCCGGTATT
GCTATCCTGC AATTCGGTGG TGGCTGTAAC GGTTGTTCTA TGGTCGATGT GACCCTGAAA
GATGGCATCG AGAAGCAGCT ACTGGATATG TTCCCTGGCG AGCTCACCGG GGTGCGCGAT
GTCACCGAAC ATCAACACGG TGAGCATTCT TACCAATAA
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| Protein sequence | MITISDAAQA HFVKLLADQP EGTHIRVFVI SPGTPSAECG VSYCPPDAVE ADDIELEFNG
FHAMVDEKSA PFLEDASIDF VTDQLGSQLT LKAPNAKMRK VDADAPLKER IEYVIQSEIN
PQLASHGGNI MLVDIDEAGI AILQFGGGCN GCSMVDVTLK DGIEKQLLDM FPGELTGVRD
VTEHQHGEHS YQ
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