| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0099 |
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| Symbol | |
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| ID | 4923300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 110231 |
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| End bp | 110905 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161610 |
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| Product | pseudouridine synthase Rlu family protein |
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| Protein accession | YP_001092230 |
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| Protein GI | 127511033 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000500513 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTACAAGA TCATTGCCGA CGAGACCGAC TTTCTGGTGA TCGACAAGGC GCCGGGCGTT
CATTTTCACA GCCAGGACGG TAGCGCCGGC GTGATGGCGC AGCTGGAGAG TGATCTCGAT
ATCAAGCTCT ATTCTGTGCA TCGCCTGGAT ACCATGACAT CTGGCCTGCT GCTGTTTGCC
AAGTCGAGCG AGGCGGCGGC AGCTTTTACC CAGCGCTTTA GCGAACACAA GGTGCAGAAG
TACTATCTGG CGCTGGCCAA GGGCAAGCCG AAGAAGAAGC AGGGCAGTAT AGTGGGTGAC
ATGGCCAAGT CCCGTCGCAG CATGTACAAG CTGCTGCGCA GCAAGGAGAA TCCGGCGATC
ACCCAGTTTT TCTCTCAGTC GGTGGCCGAG GGGCTGCGCC TCTATCTGCT TAAGCCGCTG
AGTGGCAAGA CACACCAACT CAGGGTGGCG CTGGCCAGCC TTGGGGTGCC GATTCTCGGT
GACCAACTCT ATGGTGGCGA GGATGCCGAC CGTGGCTACC TGCATGCCTA TGCCTTAGGC
TTTGAGTGGC AGGGGCAGGC GTATGCCTAT CATCAGGCCC CGGAGCAGGG CGAGGCATTT
AGCCTGGATG GGGTAAAAAA CCAGTTGCAA ACATGGAGTA AGCCTGAGAA GTTAGATTGG
CCAAAACGAA ATTGA
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| Protein sequence | MYKIIADETD FLVIDKAPGV HFHSQDGSAG VMAQLESDLD IKLYSVHRLD TMTSGLLLFA
KSSEAAAAFT QRFSEHKVQK YYLALAKGKP KKKQGSIVGD MAKSRRSMYK LLRSKENPAI
TQFFSQSVAE GLRLYLLKPL SGKTHQLRVA LASLGVPILG DQLYGGEDAD RGYLHAYALG
FEWQGQAYAY HQAPEQGEAF SLDGVKNQLQ TWSKPEKLDW PKRN
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