Gene Shew_0094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0094 
Symbol 
ID4922116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp105969 
End bp107078 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content62% 
IMG OID640161605 
ProductABC transporter-related protein 
Protein accessionYP_001092225 
Protein GI127511028 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0404805 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCTCAAG ACGTCGCTGA TCTCAGTTGT AAGATCTTTC AGCAAGAGGG CATCGCCCTG 
GACGCCGAGT TTGTCTGCAA GGCAGGCGAG GTGCTGGCGG TTGTTGGTCC CTCGGGCGGC
GGTAAGTCGA CCCTGATGCG GATGATCGCC GGCCTGACCA AGCCTGAGTC GGGCGAGATT
CGCTATGGTG ACAGCGTCTG GTTCAGCAGC GAGAGCGGCC GTTATCTTAC GCCTCAGCAA
CGCCACCTTG GCTATGTACC GCAGCATTTT GGCCTGTTTC CTAACATGAC GGCGCTGGCC
AACGTAGTGG CGGCGCTGGA TCATATTCCT AAGGCTGAGC GGGTCGCGCG GGCCAAAGAC
TGGCTCGAGC GGGTAAACCT TCACGGTCTG CCGGACAGGC TGCCGGCCAA CCTGTCCGGC
GGGCAACGCC AGCGGGTGGC CCTGGCCAGG GCCCTGGCCC GAGAGCCAAG AGTCCTGCTG
CTGGATGAGC CTTTCTCCGC CGTCGACAGG GAGACCCGCG AGCGTCTCTA TCTCGAACTG
GCCCGGCTCA AGGAGCAGCT GGCGATCCCT GTGATCATGG TGACCCACGA TCTCAACGAG
GCGCTGCTGC TGGCGGATCG CATGATCCTC ATCAGTCAGG GCACCTTGCT GCAGCAAGGC
AGTCCGCGGG AGGTGTTGAG CCGTCCGCGC AACGAGGCGG TTGCCAAACA GATGGGGCTG
AGAAACCTGT TCGACGCCCA TGTGGTGGCC CAGGAGGCGG AGCGGCAGAT CACCTGGCTC
AGGTTTGGCG AGCATCTGAT TGCCGGCAAC TACTGCGAGC AGCTGGCCAT AGGTGCCAAG
GTGCGCTGGG TGATCCCCAA TCAGGGGGTG AGGTTTAACT CCATTACCAA GGGGCGCCTG
TGCCGCAGCT TCAACAAGCT CAGCATCACC ATAGAGTCCT GCCTCAGCAT GGGGGAGACC
ATGCGCATCC TCGCCAGTAT CAAGGGGGTG AAGCATCACC TTAATGCCGA GGTGCCGCTG
CATTTCGCCC AAAAGATGGG CCTGGCGCCC GGCGTGGAAA CAGAGGTGGC CCTCAAGTCT
GAGCTGATCC ATATCCTGGA AAATGACTAA
 
Protein sequence
MSQDVADLSC KIFQQEGIAL DAEFVCKAGE VLAVVGPSGG GKSTLMRMIA GLTKPESGEI 
RYGDSVWFSS ESGRYLTPQQ RHLGYVPQHF GLFPNMTALA NVVAALDHIP KAERVARAKD
WLERVNLHGL PDRLPANLSG GQRQRVALAR ALAREPRVLL LDEPFSAVDR ETRERLYLEL
ARLKEQLAIP VIMVTHDLNE ALLLADRMIL ISQGTLLQQG SPREVLSRPR NEAVAKQMGL
RNLFDAHVVA QEAERQITWL RFGEHLIAGN YCEQLAIGAK VRWVIPNQGV RFNSITKGRL
CRSFNKLSIT IESCLSMGET MRILASIKGV KHHLNAEVPL HFAQKMGLAP GVETEVALKS
ELIHILEND