Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0094 |
Symbol | |
ID | 4922116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 105969 |
End bp | 107078 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640161605 |
Product | ABC transporter-related protein |
Protein accession | YP_001092225 |
Protein GI | 127511028 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0404805 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCTCAAG ACGTCGCTGA TCTCAGTTGT AAGATCTTTC AGCAAGAGGG CATCGCCCTG GACGCCGAGT TTGTCTGCAA GGCAGGCGAG GTGCTGGCGG TTGTTGGTCC CTCGGGCGGC GGTAAGTCGA CCCTGATGCG GATGATCGCC GGCCTGACCA AGCCTGAGTC GGGCGAGATT CGCTATGGTG ACAGCGTCTG GTTCAGCAGC GAGAGCGGCC GTTATCTTAC GCCTCAGCAA CGCCACCTTG GCTATGTACC GCAGCATTTT GGCCTGTTTC CTAACATGAC GGCGCTGGCC AACGTAGTGG CGGCGCTGGA TCATATTCCT AAGGCTGAGC GGGTCGCGCG GGCCAAAGAC TGGCTCGAGC GGGTAAACCT TCACGGTCTG CCGGACAGGC TGCCGGCCAA CCTGTCCGGC GGGCAACGCC AGCGGGTGGC CCTGGCCAGG GCCCTGGCCC GAGAGCCAAG AGTCCTGCTG CTGGATGAGC CTTTCTCCGC CGTCGACAGG GAGACCCGCG AGCGTCTCTA TCTCGAACTG GCCCGGCTCA AGGAGCAGCT GGCGATCCCT GTGATCATGG TGACCCACGA TCTCAACGAG GCGCTGCTGC TGGCGGATCG CATGATCCTC ATCAGTCAGG GCACCTTGCT GCAGCAAGGC AGTCCGCGGG AGGTGTTGAG CCGTCCGCGC AACGAGGCGG TTGCCAAACA GATGGGGCTG AGAAACCTGT TCGACGCCCA TGTGGTGGCC CAGGAGGCGG AGCGGCAGAT CACCTGGCTC AGGTTTGGCG AGCATCTGAT TGCCGGCAAC TACTGCGAGC AGCTGGCCAT AGGTGCCAAG GTGCGCTGGG TGATCCCCAA TCAGGGGGTG AGGTTTAACT CCATTACCAA GGGGCGCCTG TGCCGCAGCT TCAACAAGCT CAGCATCACC ATAGAGTCCT GCCTCAGCAT GGGGGAGACC ATGCGCATCC TCGCCAGTAT CAAGGGGGTG AAGCATCACC TTAATGCCGA GGTGCCGCTG CATTTCGCCC AAAAGATGGG CCTGGCGCCC GGCGTGGAAA CAGAGGTGGC CCTCAAGTCT GAGCTGATCC ATATCCTGGA AAATGACTAA
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Protein sequence | MSQDVADLSC KIFQQEGIAL DAEFVCKAGE VLAVVGPSGG GKSTLMRMIA GLTKPESGEI RYGDSVWFSS ESGRYLTPQQ RHLGYVPQHF GLFPNMTALA NVVAALDHIP KAERVARAKD WLERVNLHGL PDRLPANLSG GQRQRVALAR ALAREPRVLL LDEPFSAVDR ETRERLYLEL ARLKEQLAIP VIMVTHDLNE ALLLADRMIL ISQGTLLQQG SPREVLSRPR NEAVAKQMGL RNLFDAHVVA QEAERQITWL RFGEHLIAGN YCEQLAIGAK VRWVIPNQGV RFNSITKGRL CRSFNKLSIT IESCLSMGET MRILASIKGV KHHLNAEVPL HFAQKMGLAP GVETEVALKS ELIHILEND
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