| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0041 |
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| Symbol | |
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| ID | 4920424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 47293 |
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| End bp | 50577 |
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| Gene Length | 3285 bp |
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| Protein Length | 1094 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161553 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001092173 |
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| Protein GI | 127510976 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACTAC TCTCAGACCC TAAATTCCTC GCGTCTGCTT TTGTGATAAT CGAGCAAGGA
GCGCTTAAGA TGTCATCTAT GCTGAACCGG TATAGTCTGA GCCAGAAATT AATCTTGCTG
GCGACTATCC CCATGTTGCT GCTGCTGATC TTCGGCAGCT TGCGCATGCT CGATCTGATC
GAGCGTCAGC AGACGGCCCA GCGCAATGCC CTGGGGGTGA TGATCACAGA GCAGACCCAG
AAGCTCATCT TCGCCCTGCA GAACGAGCGC GGCCTGTCGG CCGGTTTTGT CGCCAGCCAG
GGTAATCGAT TCGAGCGGCG GCTACAGACC CAGCGGCGCC AGACAGACAA GGCATTGCAG
GATCTGCTGG ATGCCCCCAA TATCGCTAAC CTGCATCTCT CCCTCAGCGA CATAGACAGG
CCGAGCGTCA ACCTGCAACA GAGTGTCGAT ACCATTCATG CCCTGGGCGC CCGCCTCAAG
CAGGTGCGTC AGGGAATAGA TAGTCGCACT GAGGGAAGCG GCTTTAACTT CTACAGCGAG
TTCACTCAGC ACCTCTTGGT GCTCATCTCC CAGATCCAGT CCCAGGTACA AAACACCCTG
CTCGCCAAGG CCTACAATGA CCTTATCCAT ATGCTCAAGC TACAGGAGTT GGCGGGCAAA
GATCGCGACC TGCTCAACCG CCTGCTGGCC GCCGACAGCC TAGATCATCA GGCATATCTC
GCCCAATACT CGATGCAGGA TGACCTGCTG GACGCCTTCC ACGAAATGCT CTCGACCACT
TCCCCGGCGG ATCTTGCCCT GATCAAGGAG ACCCTAGATA ACGAGGCGAC CCAGGAGCTG
CTGCTGATGA AAGGGCGGGT GAAGGCGCAG GTGAATCTTA TTCTGCTGGC CAATCGCCTC
AGGGAGCGGC TGGGGTATGG CGGCTTGATC GATCACTATC AGGATTACCT GCTCTCGGGC
GAAGAGACCA ACATCATACT GTTCGAAGAG GACTGCCTGG CCATACAGGG GCTTTTGCAA
CAGGCCCAGA AGCTGCCCCA TGTGACCTCG CCACAGCGCG AGGCGCTGGC CCAGATAGAT
AATACCGTGG AGCAGTATCG TCAGGCGGTG GATGCCCAGC GCCAGCACAG ATTATCAGGT
CATGCCGGAC CCCTTCCACA AGAGGGGCGA GCCATCATAG CCGATCAGGC CATGTTGGCG
GCTCTTTCTC AGCTGCAACA CCAACATCCG GCGGTAGCCA GTGAAGCATG GTGGGCGCTG
GCCACTGAGG CCCTGGGGCA GATGAATCAG GCGAGCCTGA CCCTGAGCAA TAACATAGCT
AACTTGGTAC AACGTCAGGG GCGCGAGGCG CTCAGCTTCC TGGTGTTAGG CATCATGGCG
GCCATGTGCA ACTTTCTGTT TTTGATCGTC TTGGGTCGTC TCATAGTCAA TAACCTGGTG
ACCCGTATCG GCACCATAGC CTCCCTGATG CAGCGCATGG CCCAGAATAC TCAGCTGCAG
CTGTCTGTGC CGGTGGATGG GCGAGACGAG GTCGCCAAGA TGGCGATGGC CCTCAACGCC
ATGTTGAGTG AGCGCCAGGA GGCCAACCGT GAACTCTCCC TGGCCTCGGC GGTGTTTGAA
TACTGCGCCG AAGGGATAGT GGTCACCGAC AAGGATAACC TGATCGAGGC GGTAAACCCC
GCCTTTACCC AGATCACCGG CTATACCCTG GAGGAGGTGA AGGGTCGCAG CCCGGCCGTC
CTCAATTCCC ATCAGCAACC CCATCACTTC TATGAGCAGA TGTGGCAGTC GCTCAAGCAA
TACGGCAAGT GGCAGGGGGA GATCTGGAAC AAGCGTAAGA ATGGCCAGAT CTTTCCCGAA
TACCTGGCCA TTACCGTGGT GAAGGATGAC AAGGGGCGGG TGGTGCAACA TATCGGCCTC
TTCCTGGATA TCAGTAACCG TAAGAAGTAC GAGCAGGATA TCTGGTACAA GTCCAACTAC
GACGCCCTGA CCAACCTGCC TAATCGTCAG CTCTATACTT CGCGCCTGTC ACAGATGTTG
CAGCTGGCGG AGCAGCGTTG CTGCTCTGTG GCCGTGCTCT TCATCGATCT GGACAGGTTT
AAATACATCA ACGACATCTA TGGCCACGCG GTGGGCGACG AGCTGCTGCA GGTGGCGGCC
GCTAGGCTGG AAGCCCTGCT GGAACAGCAT GACTTCGTCG CCCGTCTCAG TGGCGACGAG
TTTGTGGTGG TCATGGGGCA CACCAAGCAT CAGGGCGAGA TAGAGCAGCG GGCGCAGAAT
ATATTGCAGC ACCTGTCGTC GCCTTTCGGC ATCAACCGCA ACGAGCTGCT GATCTCCGCC
AGTGTCGGCA TCAGCTGTTA CCCCAGCAAC GGCACCAGTG TCGAGGTGCT GACCCGTAAT
GCCGAGACCG CCATGTATCA GGCAAAGCAA GATGGCCGCA ACTGCTTCGG CTACTTCTCT
CCCGACATGA ACAACAACAT GCTGGCACGT ATCACCCTGG AGCAGTCGCT GCGCAGCGCC
GTGCTGCAAC ACGAGTTCTG CCTGCATTAT CAGCCGATTG TCGATACCAG CAGCGGTGAA
GGTGTCGCCC TGGAGGCCTT GCTGCGTTGG CGTCATCCAC AGCGTGGTCT GGTGCCCCCC
GACGAGTTTA TCCCCATCGC CGAAGAGACA GGGCTGATCG AGCCTATCGG CGAGTGGGTG
ATCCAGCAGG CGCTGCGTGA TCTGCGCCAG TGCCATAGCC AGGGGATAAT GATCAACATG
GCGATCAACG TCTCTGGTCG TCAGCTGGCC CACGGCGATC CCAGCCATTT CGCCTGCATG
CTCAACGGCT TGCTACAGAA ATATGATGTA GCGCCCCAAT ATGTCCACAT AGAGATCACC
GAATCGATTC TGATGGCCGA CACCGAGCTG TCGCTTAAGG CGTTGACGGC GATTCGTCAC
CTCGGGGTGG AGATCTACCT GGATGATTTC GGCACAGGCT ACTCCTCCCT CAGCTATCTG
AAGCAGTTCC CCATCTCGGT GATCAAGATA GACAAGAGTT TCGTCGACAA CATGTTGGAA
GACAGGGCGG ATGCCAACCT GATCAAGGCG ATCATCACCA TGGGGCAGAG CCTGGATATG
CGCCTAGTGG CCGAAGGGGT GGAGAGCGAG CCGCAGCGCA GCTTCCTGCA GGGGTTAGGC
TGTGACTTCG TGCAGGGCTA TCTTGTGGCC AAGCCCATGC CGCTCAAGGA GCTCGAGCCC
TTGCTGCGCC GCATCGTTAG AGAGAAACCG ACCTCATTGC TTTGA
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| Protein sequence | MLLLSDPKFL ASAFVIIEQG ALKMSSMLNR YSLSQKLILL ATIPMLLLLI FGSLRMLDLI
ERQQTAQRNA LGVMITEQTQ KLIFALQNER GLSAGFVASQ GNRFERRLQT QRRQTDKALQ
DLLDAPNIAN LHLSLSDIDR PSVNLQQSVD TIHALGARLK QVRQGIDSRT EGSGFNFYSE
FTQHLLVLIS QIQSQVQNTL LAKAYNDLIH MLKLQELAGK DRDLLNRLLA ADSLDHQAYL
AQYSMQDDLL DAFHEMLSTT SPADLALIKE TLDNEATQEL LLMKGRVKAQ VNLILLANRL
RERLGYGGLI DHYQDYLLSG EETNIILFEE DCLAIQGLLQ QAQKLPHVTS PQREALAQID
NTVEQYRQAV DAQRQHRLSG HAGPLPQEGR AIIADQAMLA ALSQLQHQHP AVASEAWWAL
ATEALGQMNQ ASLTLSNNIA NLVQRQGREA LSFLVLGIMA AMCNFLFLIV LGRLIVNNLV
TRIGTIASLM QRMAQNTQLQ LSVPVDGRDE VAKMAMALNA MLSERQEANR ELSLASAVFE
YCAEGIVVTD KDNLIEAVNP AFTQITGYTL EEVKGRSPAV LNSHQQPHHF YEQMWQSLKQ
YGKWQGEIWN KRKNGQIFPE YLAITVVKDD KGRVVQHIGL FLDISNRKKY EQDIWYKSNY
DALTNLPNRQ LYTSRLSQML QLAEQRCCSV AVLFIDLDRF KYINDIYGHA VGDELLQVAA
ARLEALLEQH DFVARLSGDE FVVVMGHTKH QGEIEQRAQN ILQHLSSPFG INRNELLISA
SVGISCYPSN GTSVEVLTRN AETAMYQAKQ DGRNCFGYFS PDMNNNMLAR ITLEQSLRSA
VLQHEFCLHY QPIVDTSSGE GVALEALLRW RHPQRGLVPP DEFIPIAEET GLIEPIGEWV
IQQALRDLRQ CHSQGIMINM AINVSGRQLA HGDPSHFACM LNGLLQKYDV APQYVHIEIT
ESILMADTEL SLKALTAIRH LGVEIYLDDF GTGYSSLSYL KQFPISVIKI DKSFVDNMLE
DRADANLIKA IITMGQSLDM RLVAEGVESE PQRSFLQGLG CDFVQGYLVA KPMPLKELEP
LLRRIVREKP TSLL
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