| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0039 |
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| Symbol | |
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| ID | 4920440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 43758 |
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| End bp | 45818 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161551 |
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| Product | oligopeptidase B |
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| Protein accession | YP_001092171 |
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| Protein GI | 127510974 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1770] Protease II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGGGA TAACGCCCCC GGTCGCACGC AAACAAGCCC ACCCTCTCAA ACATCACGGT
ATCGAGCGTA TCGATGACTA CCATTGGCTT CGAGATGACG AGCGCCAATC CCCCGAGGTA
CTGGCTCATC TGGAGGCGGA AAACGCCTAC CACAAGGCCT GTTTTGCCCC CTTCGAGCCA
CTGCAGCAGA CGTTGTTTCA GGAGCTTATC GGCCGAGTCG ACAAGGATGA GTCGAGCGTC
CCCTATCGCT GGCACCAACA TTGGTACTAC AAGCGCTATC AGGGAGAGCA GGAGTACCCG
CTGTTTGGCC GCAAACGCGA GCTGGAGGGC GAAGAGCAGC TACTGCTGGA TGCCAACGAG
CGCGCCCAGG GTAAGGAGTT TTATAGCATG GGCGGGCTGA GCGTCAGCCC AGATGAAACC
CTGCTGGCCA TCAGCGAAGA TACCCTGAGT CGGCGCCTCT ATCGCATTAG CATCAAGCGC
CTGGACACGG GTGAATGGCT CAGCGACAGC CTTAGCGACA CGGATGGCGA AATCGTCTGG
GCCAAGGATA ACCAACACAT CTTCTATATT GCCAAGGATC CTCAAACCCT ACTGGGCAAT
CGCGTCTATT GCCACCGCTT GGGTGATCCC CAGGCCAATG ACCGCCTGGT GTATCAGGAG
GCGGACGACA GCTTCTACCT GTCGATCGGC AAGAGCCTGG ATGAGTCGCG CATCCTGCTC
ACCCACGAGA GTACGCTCAC CAGCGAGGTG TCCATCTTAG ATGCCAACCA ACCAGAGGCA
TGCTTTAAGC CACTGCTTGC GCGGGAAACT GGACACGAAT ATTCGGTGGC TAAGCGCGGT
GAGGAGTATT ACATACTCAC CAACTGGCAG GCGGTGAACT TCCGTCTGAT GAAGGCCACA
GAGTCGAGCT TCGCCGATAA GCGCAGCTGG CAGGAGATCA TTCCCGCAGA TGAGTCGCGC
CGCCTGGAAG ATCTTCTGGT GTTAAAAGAC TATCTTGTGG TGCAGTATCG CCAGCAGGGG
CTGAGTCAGA TCCGCATCTT GCCCCTCAAC GGCGCCCCGG AATATGAACT CGACTTCGAC
GATGCCGCCT ACGTGGTGGG TCTTGATGTT AACCCGACTC AAGATAGCCA TCATCTGCGC
ATCTACTACG CCAGCCCATC GACGCCCGAG TCCATCTACT TGGTGGATCT CACCCAGGCC
AGCCCGAGAC GCCTGCTGAA ACAGGAGCGA GTACTCGGCG GCTTCGATAG CCAACACTAC
CAGACTGAGC GGCTCTTCAT CGACGCCAGA GACGGCGCCA AGGTGCCCGT GACCCTGGTT
TATCGCAAGG ACAAGTTTCG CCAGGACGGC AGCAACCCCT TGTATCAATA TGGCTATGGC
GCCTACGGCT ACACCATAGA ACCTGACTTC GACAGCGCCA TCCTCAGCCT GTTGGATCGC
GGCGTCGTCT ATGCGGTCGC TCACGTGCGC GGTGGCGAGA TGTTGGGGCG TCCCTGGTAC
GACGCCGGCC GCCTGATGCA AAAACAGAAC AGCTTCAACG ACTTTATCGA CGTCACCCTA
GCCTTGGTGG AGCTAGGCTA CTGCGCCCGG GACAAGGTGG TTGCCAGTGG CGGCAGTGCC
GGTGGCCTCC TGATGGGCGC GGTGATCAAT CAGGCACCGC AGCATTATCT GGCCGTGGCG
GCCCACGTGC CCTTCGTCGA TATCGTCACC ACAATGCTCG ACGAATCGCT GCCCCTGACC
ACCAACGAGT ATGATGAGTG GGGTAACCCG AATCAGGCCG AGGCTTACCG CTACATGCTG
AGCTATTCGC CCTACGACAA CATCAGCCGT CAGGCCTACC CGCACCTGCT GGTCACCACA
GGCCTGCACG ACTCTCAGGT GCAATATTTC GAGCCCGCCA AATGGGTGGC GAAACTCAGA
GAATATAAAC AAGACGAGCA CCTGTTGCTG TTTCATATCG ACATGGAGGC GGGTCATGGC
GGCAAGAGCG GCCGTTATCG TCACTTTGAG GACACGGCCG AAGAGTACGC CTTCTTCTTC
GGCCTGTTGG GACTCGCCTA A
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| Protein sequence | MSGITPPVAR KQAHPLKHHG IERIDDYHWL RDDERQSPEV LAHLEAENAY HKACFAPFEP
LQQTLFQELI GRVDKDESSV PYRWHQHWYY KRYQGEQEYP LFGRKRELEG EEQLLLDANE
RAQGKEFYSM GGLSVSPDET LLAISEDTLS RRLYRISIKR LDTGEWLSDS LSDTDGEIVW
AKDNQHIFYI AKDPQTLLGN RVYCHRLGDP QANDRLVYQE ADDSFYLSIG KSLDESRILL
THESTLTSEV SILDANQPEA CFKPLLARET GHEYSVAKRG EEYYILTNWQ AVNFRLMKAT
ESSFADKRSW QEIIPADESR RLEDLLVLKD YLVVQYRQQG LSQIRILPLN GAPEYELDFD
DAAYVVGLDV NPTQDSHHLR IYYASPSTPE SIYLVDLTQA SPRRLLKQER VLGGFDSQHY
QTERLFIDAR DGAKVPVTLV YRKDKFRQDG SNPLYQYGYG AYGYTIEPDF DSAILSLLDR
GVVYAVAHVR GGEMLGRPWY DAGRLMQKQN SFNDFIDVTL ALVELGYCAR DKVVASGGSA
GGLLMGAVIN QAPQHYLAVA AHVPFVDIVT TMLDESLPLT TNEYDEWGNP NQAEAYRYML
SYSPYDNISR QAYPHLLVTT GLHDSQVQYF EPAKWVAKLR EYKQDEHLLL FHIDMEAGHG
GKSGRYRHFE DTAEEYAFFF GLLGLA
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