| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0032 |
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| Symbol | |
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| ID | 4920496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 34426 |
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| End bp | 37575 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640161544 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001092164 |
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| Protein GI | 127510967 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGTT TTTTCATCGA TCGCCCTATC TTTGCCTGGG TGATTGCAAT TATTGTTATG
TTGGCCGGGG TGCTCTCTAT CATGAAGCTT CCCGTGTCGC AGTACCCGAG TATTGCGCCG
CCGACCGTGG TGATTAACGC CATCTATCCG GGTGCGTCTG CCAAGACCAT GGAAGACACT
GTGACCCAGG TGATCGAGCA GCGCATGACG GGTATCGACC ATCTGCGTTA CATCTCGTCT
ACCAGTGACA GCTTTGGTAA TGCGCAGATC ACCCTGACGT TCAATGCCGA GGCTGATCCC
GATATCGCCC AGGTTCAGGT GCAGAACAAG CTGCAGCTGG CGATGCCTCT GCTACCGCAA
GAGGTGCAGG CGCAAGGGGT TAAGGTCAAC AAATCCAGCT CGGGTTTCTT GATGGTACTG
GGCTTCGTGT CCCAGGATGG CTCGCTGGAG AAGAATGATA TCTCCGACTA TGTGGGCTCT
AACATCTTAG ACCCTATGAG TCGTGTGCCC GGTGTGGGCG AGATCCAGCT GTTCGGTGCC
CAGTACGCCA TGCGTATCTG GCTAGACCCG CTCAAGCTGA CTCAATACAA CCTCACCAGC
CTGGACATCA TGGCCTCGAT TCGTGAGCAG AATGCTCAGG TGTCTGCGGG TCAGTTGGGC
GGCGCGCCCT CTATTGCGGG TCAGGAACTC AACGCCACGG TAACGGCTCA GAGTCGTCTA
CAGACCGCCG AAGAGTTTAG AAAGATCATC ATCAAGTCCG ATCCGTCGGG CGCCAAGGTT
TACCTGGAAG ATGTGGCCCG AGTCGAACTG GGCTCGGAAA GTTATTCGGT AGAGTCCTTC
TATAACGGCC GTCCGGCTGC CGGTCTGGCG ATCAAGCTGG CTACGGGGGC TAACGCCCTG
GCGACCGCCG AGCGTGTGCG TGAGAAGGTC GATGAGATGA AGCCTTTCTT CCCGCAAGGG
CTGGAAGTGG TTTATCCCTA TGACACCACC CCCTTCGTTG AGAAATCGAT CGAGGGCGTA
GTGCATACCC TGCTGGAAGC CGTGGTACTG GTGTTTGTGA TCATGTACCT CTTCCTGCAG
AACTTCCGTG CGACCCTGAT CCCGACCATT GCGGTACCTG TGGTACTGCT GGGGACCTTC
GCCATCCTGT CGGCTACCGG CTTCTCGATC AACACCCTGA CCATGTTCGC CATGGTATTG
GCCATCGGTC TGCTGGTGGA TGACGCCATC GTGGTGGTAG AGAACGTCGA ACGTGTGATG
TCCGAAGACG GCTTGAGCCC GATTGAGGCC ACCAAGAAGT CGATGGACCA GATCACCGGC
GCCCTGGTGG GTATCGGTCT AACCCTGTCG GCGGTGTTCG TGCCTATGGC ATTCATGTCG
GGTTCGACCG GTGTGATCTA TCGTCAGTTC TCCGTGACTA TCGTATCGGC CATGGCGCTT
TCTGTGCTGG TGGCGATCAT CCTGACGCCG GCACTGTGTG CCACCATGCT TAAGCCGATT
GCCAAGGGCC ACCATGCGGT CGAGACGGGT TTCTTCGGTT GGTTTAACCG CACCTTCGAC
AAGATGACCT CGCGTTACGA GGCTGGCGTG GCAGCGATGA TCAAGCGCGC CGGTCGCGTC
ATGTTGATCT ACGTGGCCCT GACGGTTGCC GTGGGTTGGA TCTTCATGCG CATGCCGACC
GCCTTCTTGC CGGACGAAGA CCAGGGTATC TTGTTTACCC AGGCGATCCT GCCGACCAAC
TCGACCCAAG AGAGCACCAA GAAGGTGATG AGCAAGATCT CCGACTTCTA TCTCAACGAG
ACGGGCGACA GCGTCAAGTC GGTATTTAGC GTATCAGGCT TCAGCTTCGC CGGTAGTGGT
CAAAACATGG GTCTTGCCTT CGTTGGCATG AAAGACTGGT CTGAGCGTAC CGGCCCGGGT
CAAGACGTTA AGTCGGTCGC CGGACGTGCC ATGGGCATGT TCATGCAGAT GAAGGAGGCC
TTCGTGTTTG CCTTCGTACC GCCTGCGGTG ATCGAGCTGG GTACGGCAAA CGGTTTCGAT
TTCTATCTGC AAGACAGAAA TGGCCAAGGC CATGAGAAGC TGCTCGAGGC CCGTAATATG
CTGCTGGGCA TGGCGTCGCA AAATCCTAAC CTGGTGGGTG TGCGTCCAAA CGGTCAGGAA
GATGCGCCTA TGTATCGCAT CCATATTGAT CACGCCAAGC TTCGCGCCCT GAGTATCGAT
ATCGACGCGG TCAACAGCGT GTTGGGTACT GCCTGGGGTG GTAGCTATGT GAACGACTTC
ATCGACCGTG GTCGTGTGAA GAAGGTCTAT GTGCAGGGTG ATGCCCAGTA CCGTATGCAG
CCGGAAGACC TCGATACCTG GTATGTGCGT AACAGCCAGG GTGAGATGGT GCCTTTCTCG
GCCTTCGCCA CAGGTACCTG GGAATATGGT TCGCCGCGTC TAGAACGTTT CAACGGTCTG
CCTGCGATGA ACATCCAGGG CGGCACGGCA CAAGGTTATA GTACGGGTGC GGCTATGGCC
GACATCGAGG CTATGGTGGC CAAGTTACCG CCAGGATTCG GCGTCGAGTG GAACGGCCTG
TCATACGAGG AACGTCTCTC GGGTAACCAG GCGCCGGCGC TGTATGCGCT GTCTATCATG
GTGGTCTTCC TGGTTTTGGC GGCCCTGTAT GAGAGCTGGT CTGTGCCGTT TGCGGTGATC
TTGGTGGTAC CACTGGGGAT CATAGGAGCC TTGCTGGCGA TGAACGGTCG TGGCCTGCCT
AACGACGTGT TCTTCCAGGT GGGTCTGTTG ACTACCGTAG GTCTGGCGAC CAAGAACGCC
ATCCTGATCG TCGAATTCGC CAAAGAGTTC TACGAGAAGG GCGCGGGTCT GGTGGAAGCG
ACCCTGCACG CGGTGCGTGT GCGTCTGCGT CCTATCCTGA TGACCTCGCT GGCCTTCGGT
CTGGGTGTTG TGCCGCTGGC CATCAGCTCG GGCGTAGGTT CGGGCAGCCA GAACGCTATC
GGTACCGGCG TATTGGGCGG CATGATGAGT TCGACCTTCC TGGGGATCTT CTTTATCCCT
ATCTTCTTCG TGATTGTGGA GCGCATCTTC AGCAAGCGCG AGAAGAAGGG CGCCGCAACT
CAGGTCGCCG ACTCGACACC ACAAGAATAG
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| Protein sequence | MARFFIDRPI FAWVIAIIVM LAGVLSIMKL PVSQYPSIAP PTVVINAIYP GASAKTMEDT
VTQVIEQRMT GIDHLRYISS TSDSFGNAQI TLTFNAEADP DIAQVQVQNK LQLAMPLLPQ
EVQAQGVKVN KSSSGFLMVL GFVSQDGSLE KNDISDYVGS NILDPMSRVP GVGEIQLFGA
QYAMRIWLDP LKLTQYNLTS LDIMASIREQ NAQVSAGQLG GAPSIAGQEL NATVTAQSRL
QTAEEFRKII IKSDPSGAKV YLEDVARVEL GSESYSVESF YNGRPAAGLA IKLATGANAL
ATAERVREKV DEMKPFFPQG LEVVYPYDTT PFVEKSIEGV VHTLLEAVVL VFVIMYLFLQ
NFRATLIPTI AVPVVLLGTF AILSATGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
SEDGLSPIEA TKKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SVTIVSAMAL
SVLVAIILTP ALCATMLKPI AKGHHAVETG FFGWFNRTFD KMTSRYEAGV AAMIKRAGRV
MLIYVALTVA VGWIFMRMPT AFLPDEDQGI LFTQAILPTN STQESTKKVM SKISDFYLNE
TGDSVKSVFS VSGFSFAGSG QNMGLAFVGM KDWSERTGPG QDVKSVAGRA MGMFMQMKEA
FVFAFVPPAV IELGTANGFD FYLQDRNGQG HEKLLEARNM LLGMASQNPN LVGVRPNGQE
DAPMYRIHID HAKLRALSID IDAVNSVLGT AWGGSYVNDF IDRGRVKKVY VQGDAQYRMQ
PEDLDTWYVR NSQGEMVPFS AFATGTWEYG SPRLERFNGL PAMNIQGGTA QGYSTGAAMA
DIEAMVAKLP PGFGVEWNGL SYEERLSGNQ APALYALSIM VVFLVLAALY ESWSVPFAVI
LVVPLGIIGA LLAMNGRGLP NDVFFQVGLL TTVGLATKNA ILIVEFAKEF YEKGAGLVEA
TLHAVRVRLR PILMTSLAFG LGVVPLAISS GVGSGSQNAI GTGVLGGMMS STFLGIFFIP
IFFVIVERIF SKREKKGAAT QVADSTPQE
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