| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0022 |
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| Symbol | |
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| ID | 4921721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 25599 |
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| End bp | 27056 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161534 |
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| Product | TrkH family potassium uptake protein |
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| Protein accession | YP_001092154 |
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| Protein GI | 127510957 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
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| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00747974 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATATA GAACCATTAT AAGAATTACA GGCCTACTCA TGGGGCTGTT TTCTTTGTCG
CTTCTGCCGC CAGCGCTGGT TGCCGTGATC TACAAAGATG GCGGGGGCAC AGCCTTTCTG
CAGGCCTTCT TCCTCAGCTT GTTACTCGGC TTCGTGCTCT GGTATCCCAA CAGGCGTCAC
AAGAAGGATC TGCGCACCCG AGAGGGCTTT ATGCTGGTGG TGCTCTTCTG GGGCGTGTTG
GGCTCCATAG GTGCTGTGCC TTTTATCTTC TCCAGTCAGC CCGATCTTTC GCTCACCGAC
AGCTTCTTCG AGTCCTTCTC GGCGCTCACC ACCACAGGGG CGACCGTGCT GGTGGGGCTA
GATAGCCTGC CCAAGGCGAT CCTCTTCTAT CGCCACCTAT TGCAGTGGCT CGGCGGAATG
GGGATCATCG TCCTGGCGGT AGCCATTCTG CCCGTGCTCG GGATTGGGGG GATGCAGCTC
TACCGTGCGG AGATCCCCGG GCCGGTGAAA GACAGTAAGA TGACGCCGCG AATCGCCGAG
ACCGCCAAGG CGCTCTGGTA TATCTATCTG GCGCTGACCA TCGCCTGTGC CTTCGCCTAC
TGGGTCGCCG GCATGGATGT GTTCGATGCC ATCTGTCACT CGTTTTCTAC CATCGCCATT
GGCGGCTTCT CTACCCATGA CGCCAGCATG GGATACTTCG ATAGCACGGC GATCAACATG
GTGTGTGTGG TGTTTCTGTT GATTGCGGCG CTGAACTTCA GCCTGCACTT TGCGGCCTTT
ACCCGCCGCG GCATCAACCT CAAGGTTTAT CTGAGAGACG CCGAGTTTAA GGCGCTTATC
GTGATCCAGC TGGCGCTGAC GCTGATCTGT TTTGCGACCC TGTACCATAC CGGCATCTAT
GACAGTGCCG AGGAGACTTT CGACTTCGCC CTGTTCCAGG CGGTCTCTAT CTCCACCACG
GCGGGCTTCG GTACCGAAAG CTTCCATATG TGGCCGCTGT TCCTGCCTAT GCTGCTGATC
TTCTCCAGCT TCATCGGTGG CTGTGGCGGC TCGACTGCCG GCGGCATCAA GGTGATGCGG
ATGATTTTAC TGCTGCTGCA GGGCTCACGA GAACTCAAAC GCCTGGTGCA CCCCAGGGGC
ATGTTCTCCA TCCGTATCAA TGGTAAGGCG CTGCCGGATC GCATCATAGA TGCGGTATGG
GGCTTCTTCT CTGCTTACGC CCTCGTTTTT GTGGTTTGCA TGTTGATCCT GATGGCGCTG
GGCATGGATA ATATCACCGC CTTCAGCGCG ACCGCGGCCT GTTTGAATAA CCTGGGGCCT
GGGCTAGGTG AGGTGGCCAG TAACTATGCC AGCATTGGCG ATGGCGAGAA GTGGGTGTTG
GTGGTGGCCA TGCTATTCGG CCGATTGGAA GTGTTTACCT TATTGGTGTT GTTTACACCG
ACTTTTTGGA AGAATTAA
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| Protein sequence | MQYRTIIRIT GLLMGLFSLS LLPPALVAVI YKDGGGTAFL QAFFLSLLLG FVLWYPNRRH
KKDLRTREGF MLVVLFWGVL GSIGAVPFIF SSQPDLSLTD SFFESFSALT TTGATVLVGL
DSLPKAILFY RHLLQWLGGM GIIVLAVAIL PVLGIGGMQL YRAEIPGPVK DSKMTPRIAE
TAKALWYIYL ALTIACAFAY WVAGMDVFDA ICHSFSTIAI GGFSTHDASM GYFDSTAINM
VCVVFLLIAA LNFSLHFAAF TRRGINLKVY LRDAEFKALI VIQLALTLIC FATLYHTGIY
DSAEETFDFA LFQAVSISTT AGFGTESFHM WPLFLPMLLI FSSFIGGCGG STAGGIKVMR
MILLLLQGSR ELKRLVHPRG MFSIRINGKA LPDRIIDAVW GFFSAYALVF VVCMLILMAL
GMDNITAFSA TAACLNNLGP GLGEVASNYA SIGDGEKWVL VVAMLFGRLE VFTLLVLFTP
TFWKN
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