| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0018 |
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| Symbol | fadA |
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| ID | 4920559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 19854 |
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| End bp | 21017 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161530 |
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| Product | 3-ketoacyl-CoA thiolase |
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| Protein accession | YP_001092150 |
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| Protein GI | 127510953 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
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| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.56685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.969653 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACAAG CAGTTATTGT AGATTGCATC CGTACTCCCA TGGGCCGCTC TAAGGCTGGG
GTATTCAGAA ACATGCGCGC CGAATCGCTC TCTGCCGAGC TGATGAAGGC CCTCTTGGTT
CGCAATCCTC AACTCGATCC TAATACTATT GAAGACGTTA TCTGGGGTTG TGTGCAGCAG
ACGCTGGAAC AGGGCTTCAA CATCGCACGT AATGCGGCGC TGCTAGCCGG CATTCCGAAA
CAGGCCGGAG CGGTGACGGT AAACCGTCTA TGTGGGTCTT CCATGGAAGC CATTCATCAG
GCGGCTCGCG CTATCATGAC TGGCATGGGC GATACCTTCA TCGTCGGCGG TGTCGAACAC
ATGGGCCACG TGCCAATGAA CCATGGGGTC GACTTCCACC CAGGCCTGGC CACCAATGTC
GCCAAGGCCT CTGGCATGAT GGGCCTCACC GCCGAGATGC TAGGCAAGAT GCACGGCATC
ACACGCCAAC AACAAGACGA GTTTGCAGTA CGTTCACACC AACGTGCCCA CGCGGCAACG
GTCGAAGGCC GCTTTGCCAA CGAGATCCAT GCTATCGAGG GTCATGATGC CAACGGCGCA
CTGATCAAGG TAATGCATGA CGAGGTGATT CGTCCTGAGA CCTCACTGGA ATCACTGGCG
ACCCTGCGTC CGGTATTCGA CCCAGCCAAC GGTACTGTCA CCGCGGGTAC CTCTTCGGCA
CTGTCTGACG GCGCCTCGGC CATGTTGGTC ATGGAAGAAG AGAAAGCCAA GGCCTTAGGT
CTGCCGATCC GTGCTCGTAT CCGTTCTATG GCGGTTGCTG GTTGTGACGC CGCCATCATG
GGCTATGGTC CAGTACCGGC CACCCAGAAG GCGTTGCAAC GCGCCGGCCT CACCATGAAC
GACATCGACC TTATCGAGCT CAACGAGGCC TTCGCCGCGC AGTCACTGCC ATGTGTGAAA
GATCTTGGCT TGATGGATCT GGTGGATGAG AAGGTGAACC TCAACGGCGG CGCTATCGCC
CTGGGTCATC CACTGGGCTG CTCGGGCGCA CGTATCTCGA CCACGCTGAT CAACCTGATG
GAAAGCAAAG ATGCGACCCT AGGTCTGGCG ACCATGTGTA TCGGTCTGGG CCAAGGCATA
GCAACCGTAT TCGAACGCGC CTAA
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| Protein sequence | MKQAVIVDCI RTPMGRSKAG VFRNMRAESL SAELMKALLV RNPQLDPNTI EDVIWGCVQQ
TLEQGFNIAR NAALLAGIPK QAGAVTVNRL CGSSMEAIHQ AARAIMTGMG DTFIVGGVEH
MGHVPMNHGV DFHPGLATNV AKASGMMGLT AEMLGKMHGI TRQQQDEFAV RSHQRAHAAT
VEGRFANEIH AIEGHDANGA LIKVMHDEVI RPETSLESLA TLRPVFDPAN GTVTAGTSSA
LSDGASAMLV MEEEKAKALG LPIRARIRSM AVAGCDAAIM GYGPVPATQK ALQRAGLTMN
DIDLIELNEA FAAQSLPCVK DLGLMDLVDE KVNLNGGAIA LGHPLGCSGA RISTTLINLM
ESKDATLGLA TMCIGLGQGI ATVFERA
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