| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0011 |
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| Symbol | |
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| ID | 4923999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 12604 |
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| End bp | 13173 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640161523 |
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| Product | DNA-3-methyladenine glycosylase I |
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| Protein accession | YP_001092143 |
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| Protein GI | 127510946 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2818] 3-methyladenine DNA glycosylase |
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| TIGRFAM ID | [TIGR00624] DNA-3-methyladenine glycosylase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00532682 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGATGTAA AGCGTTGTGG CTGGGTCGGC GAGGATCCGC TATATAAGGC GTATCATGAC
GAGGTTTGGG GACGTCCCGT GTATGACAGT CGGGAGCTGT TTGCCAAGCT CTGTCTCGAC
GGGCAACAGG CGGGTCTATC CTGGATTACC ATACTCAAGA AGCAGCAAAA TTATGAGTCG
GCCTTTGCCG ATTTTGACCC CTATGTCATA GCCAAGTTCG ATGAGGCAAA GGTAGAGGAA
TTACTACAAA ATCCCGGCAT CATTCGTAAC AGGCTCAAGG TCAATTCCAT CATCAAGAAT
GCCAAGGGTT ACATCGCCTT CGTGGAGCAG GGCAACGACT TCTCCGAGTT TCTCTGGAGT
TTTGTCGGCG GTCAGCCCAA GCTGAATCAT TTTCAACGGC TGGATCAGCT GCCGGCACAG
ACACCCGAGT CGGAAGCCAT GTCAAAGGCA TTGAAAAAGC TTGGTTTTAA TTTTGTCGGC
CCGACTATCT GCTATGCCTT CATGCAGGCG GTAGGTATGG TCAACGACCA CACCGCCGAC
TGTTTCTGTT ACCAAGATAA GTCTAACTAA
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| Protein sequence | MDVKRCGWVG EDPLYKAYHD EVWGRPVYDS RELFAKLCLD GQQAGLSWIT ILKKQQNYES
AFADFDPYVI AKFDEAKVEE LLQNPGIIRN RLKVNSIIKN AKGYIAFVEQ GNDFSEFLWS
FVGGQPKLNH FQRLDQLPAQ TPESEAMSKA LKKLGFNFVG PTICYAFMQA VGMVNDHTAD
CFCYQDKSN
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