Gene Shew_0010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0010 
SymbolglyQ 
ID4923915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp11589 
End bp12494 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content53% 
IMG OID640161522 
Productglycyl-tRNA synthetase subunit alpha 
Protein accessionYP_001092142 
Protein GI127510945 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0752] Glycyl-tRNA synthetase, alpha subunit 
TIGRFAM ID[TIGR00388] glycyl-tRNA synthetase, tetrameric type, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00552655 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGACGA AACATGACGT AAAAACATTC CAGGGTTTCA TCTTAACCCT GCAGGAATAC 
TGGGCGCAGC AAGGTTGCGC TATCGTTCAA CCGCTGGACA TGGAAGTAGG CGCGGGCACT
TTCCACCCTA TGACCTTCTT GCGTTCTCTT GGCCCTGAGC CGATGAGCAG CGCCTATGTT
CAGCCATGTC GTCGTCCTAC CGATGGTCGT TACGGTGAAA ACCCTAACCG TCTGCAACAC
TACTACCAGT TCCAGGTAGT ACTTAAGCCG TCGCCAAGCA ATATCCAGGA ACTCTACCTG
GGTTCTCTTG AAGCCTTGGG TGTCGACATG AATATTCATG ACGTACGCTT CGTGGAAGAC
AACTGGGAAT CTCCGACTCT GGGTGCCTGG GGACTGGGCT GGGAAGTCTG GCTAAACGGC
ATGGAAGTGT CTCAGTTTAC CTACTTCCAG CAGGTTGGTG GCCTGGAGTG TAGCCCTGTG
ACAGGTGAGA TCACCTATGG TCTAGAGCGT CTGGCCATGT ATATCCAGGA AGTTGACAGC
GTCTATGATC TGGTGTGGAC CGACGGCCCT ATGGGCAAGA TCATGTACGG CGATGTGTTC
CATCAAAACG AGGTTGAGCA ATCGACCTAT AACTTCGAAC ACGCCAACGT AGAAGTACTG
TTCAAGCAGT TTGACGACTG CGAGAAAGCC TGTAACGAGC TGCTAGCACT CGAGACGCCA
CTGCCCTTGC CTGCCTATGA GCAGGTGATG AAAGCCTCTC ACGCCTTCAA CCTACTCGAT
GCCCGTCATG CTATTTCGGT CACCGAGCGT CAGCGCTATA TTCTGCGTGT GCGCACCATG
GCCAAGTCAG TGGCTGAGTC CTATTACCAA GCCCGTGAAG CACTCGGCTT CCCAATGTGT
AAGTAG
 
Protein sequence
MTTKHDVKTF QGFILTLQEY WAQQGCAIVQ PLDMEVGAGT FHPMTFLRSL GPEPMSSAYV 
QPCRRPTDGR YGENPNRLQH YYQFQVVLKP SPSNIQELYL GSLEALGVDM NIHDVRFVED
NWESPTLGAW GLGWEVWLNG MEVSQFTYFQ QVGGLECSPV TGEITYGLER LAMYIQEVDS
VYDLVWTDGP MGKIMYGDVF HQNEVEQSTY NFEHANVEVL FKQFDDCEKA CNELLALETP
LPLPAYEQVM KASHAFNLLD ARHAISVTER QRYILRVRTM AKSVAESYYQ AREALGFPMC
K